RetrogeneDB ID: | retro_cpor_280 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_116:3472438..3473437(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBM22 | ||
Ensembl ID: | ENSCPOG00000001946 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.45 % |
Parental protein coverage: | 79.29 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEV |
.A.SLGSN.YNRQNWEDADF.ILCQ.CLGENPY..M..EKY.KECKICARPFTVF..C..V.M.FKK..V | |
Retrocopy | VAISLGSNAYNRQNWEDADFLILCQICLGENPYLQMINEKYQKECKICARPFTVFHCCSEVCMCFKKI*V |
Parental | CQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNME-REISNSDGTRPVGMLGK |
C.TCSKLKN.CQTCLLDLEYGLPIQV.D.GLSFKDD...S.VNKEYYTQNME.REISNSDG..PVG.LGK | |
Retrocopy | CLTCSKLKNFCQTCLLDLEYGLPIQVSDSGLSFKDDILMSYVNKEYYTQNME<REISNSDGISPVGTLGK |
Parental | ATSTSDMLLKLARTTPYYKRNR-PHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDP |
ATSTSDMLLKLA.T..Y.KRN..PHICSFW.KGECKRGEECP...EK.TD.D..LADQNIK..Y.G..DP | |
Retrocopy | ATSTSDMLLKLAQTVSYSKRNH<PHICSFWLKGECKRGEECP*IYEKLTDQDSSLADQNIKYWYCGMRDP |
Parental | VADKLL-KRASTMPRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATR |
.A.KLL.K.AS.M..L.PP.DK..TTLYV.GL...ITET.LRNHFY..G.I.TITVVQRQQC.FI..ATR | |
Retrocopy | EAAKLL>KQASAMLCLNPPKDKIFTTLYVVGLDNAITETYLRNHFYHLGVI*TITVVQRQQCTFI*LATR |
Parental | QAAEVAAEKSFNKLIVNGRRLNVKW-GRSQAARGKEKEKDGTTDSG-IKLEPVPG-LPG |
QAAE.AAEK.FN..IVNG.RL..KW..RSQAA.G.E.EKDG.TDSG..KLE.V.G.LPG | |
Retrocopy | QAAEMAAEKTFN*AIVNGHRLSMKWAARSQAAKGREREKDGITDSG<VKLETVLG<LPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .13 RPM |
SRP017611_liver | 0 .00 RPM | 9 .45 RPM |
SRP040447_lung | 0 .00 RPM | 17 .15 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 11 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018082 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020963 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000001946 | 2 retrocopies |
retro_cpor_280 , retro_cpor_283,
|
Dasypus novemcinctus | ENSDNOG00000011166 | 1 retrocopy | |
Homo sapiens | ENSG00000086589 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000012947 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009040 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020683 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000009574 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015955 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000017423 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000003939 | 3 retrocopies |