Parental gene:

RBM22, ENSCPOG00000001946

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_6:12484875..12495192(-)


>ENSCPOG00000001946
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGATTTCCCGATTCTATGCCAGACATG
TCTTGGCGAAAACCCATATATCCGAATGACCAAAGAAAAGTATGGGAAAGAATGCAAGATCTGTGCCAGGCCATTCACAG
TGTTTCGCTGGTGTCCTGGGGTCCGCATGCGCTTCAAGAAGACTGAAGTGTGCCAAACCTGCAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTCTTAGACCTAGAGTATGGCCTGCCCATCCAGGTTCGAGATGCAGGACTGTCTTTTAAAGATGACAT
GCCAAAATCAGATGTCAATAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGCCAG
TTGGCATGCTGGGGAAAGCCACGTCCACCAGTGACATGCTGCTTAAACTGGCCCGGACCACACCCTACTACAAAAGGAAT
CGGCCCCACATTTGTTCGTTCTGGGTGAAAGGAGAGTGTAAGAGAGGAGAGGAATGTCCGTACAGACATGAGAAGCCTAC
AGATCCAGATGATCCCCTTGCTGATCAGAACATTAAAGACCGGTATTATGGAATCAATGACCCTGTAGCAGATAAGCTTC
TAAAGCGAGCTTCCACAATGCCTCGTCTAGACCCCCCCGAGGATAAGACTATCACCACGCTGTATGTTGGTGGTCTAGGA
GATACCATCACTGAGACAGACCTCAGAAACCATTTCTACCAGTTTGGAGAGATCCGGACGATCACTGTTGTACAGAGGCA
GCAGTGCGCTTTCATCCAGTTTGCCACAAGGCAAGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTGTCA
ATGGCCGCAGACTTAATGTGAAATGGGGAAGGTCCCAAGCAGCCAGGGGTAAAGAAAAAGAGAAGGATGGAACCACAGAC
TCCGGGATCAAGCTAGAGCCTGTTCCTGGGCTGCCAGGAGCTCTTCCACCTCCTCCAGCAGCAGAAGAGGAAGCCTCTGC
CAACTACTTCAACCTGCCCCCAAGCGGTCCTCCTGCAGTGGTGAACATTGCCCTGCCCCCGCCCCCTGGGATTGCCCCGC
CCCCACCCCCAGGTTTTGGGCCACACATGTTCCATCCAATGGGACCACCCCCTCCTTTTATGAGGGCTCCAGGACCAATT
CACTACCCTTCTCAGGATCCTCAGCGGATGGGAGCGCATGCCGGAAAACACAGCAGCCCC

Library Parental gene expression (RPM)
SRP017611_brain 12 .19 RPM
SRP017611_kidney 14 .13 RPM
SRP017611_liver 9 .45 RPM
SRP040447_lung 17 .15 RPM
SRP040447_skeletal_muscle 11 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018082 ortholog_one2one 1 retrogene
retro_cfam_1480,
Callithrix jacchus ENSCJAG00000020963 ortholog_one2one 6 retrogenes
retro_cjac_1338, retro_cjac_2471, retro_cjac_3342, retro_cjac_3390, retro_cjac_3934, retro_cjac_990,
Dasypus novemcinctus ENSDNOG00000011166 ortholog_one2one 1 retrogene
retro_dnov_2298,
Homo sapiens ENSG00000086589 ortholog_one2one 2 retrogenes
retro_hsap_3465, retro_hsap_4273,
Gorilla gorilla ENSGGOG00000012947 ortholog_one2one 2 retrogenes
retro_ggor_2337, retro_ggor_2859,
Myotis lucifugus ENSMLUG00000009040 possible_ortholog 2 retrogenes
retro_mluc_1453, retro_mluc_153,
Macaca mulatta ENSMMUG00000020683 ortholog_one2one 4 retrogenes
retro_mmul_1199, retro_mmul_1348, retro_mmul_1553, retro_mmul_1762,
Monodelphis domestica ENSMODG00000009574 possible_ortholog 1 retrogene
retro_mdom_186,
Pongo abelii ENSPPYG00000015955 ortholog_one2one 4 retrogenes
retro_pabe_1412, retro_pabe_1594, retro_pabe_2861, retro_pabe_3486,
Pan troglodytes ENSPTRG00000017423 ortholog_one2one 2 retrogenes
retro_ptro_2348, retro_ptro_2898,
Tarsius syrichta ENSTSYG00000003939 ortholog_one2one 3 retrogenes
retro_tsyr_1090, retro_tsyr_1187, retro_tsyr_1231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_280 73.45 79.29
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cpor_283 72.24 78.57
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000001946 retrocopies