Parental gene:

RBM22, ENSPTRG00000017423

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:151557831..151568157(-)


>ENSPTRG00000017423
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATTCTGTGCCAGACATG
TCTTGGAGAAAACCCATATATCCGAATGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACAG
TGTTTCGCTGGTGCCCTGGAGTCCGCATGCGTTTCAAGAAGACTGAAGTGTGCCAAACCTGCAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTCTTAGACCTAGAGTATGGCCTGCCCATCCAGGTTCGTGACGCAGGATTGTCTTTTAAAGACGACAT
GCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGCCAG
TTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGGAAT
CGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAGAGAGGAGAGGAATGTCCATACAGACATGAGAAGCCTAC
AGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGATCGTTATTACGGAATCAATGATCCTGTGGCTGACAAGCTTC
TAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCAGAGGATAAAACTATCACCACACTATATGTTGGTGGTCTAGGT
GATACCATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTCGGAGAGATCCGGACGATCACTGTTGTGCAGAGACA
GCAGTGTGCTTTCATCCAGTTTGCCACACGGCAGGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTGTAA
ATGGCCGCAGACTGAATGTGAAATGGGGAAGATCCCAGGCAGCCAGAGGAAAAGAAAAAGAGAAAGATGGAACTACAGAC
TCTGGGATCAAACTGGAACCTGTTCCAGGATTGCCAGGAGCTCTTCCTCCTCCTCCTGCGGCAGAAGAAGAAGCCTCTGC
CAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTGGTGAACATTGCTCTGCCACCGCCCCCTGGCATTGCTCCAC
CCCCACCCCCAGGTTTTGGGCCACACATGTTCCACCCAATGGGACCACCCCCTCCTTTCATGCGGGCTCCAGGACCAATC
CACTATCCTTCTCAGGACCCTCAGAGGATGGGAGCTCATGCTGGAAAACACAGCAGCCCCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 24 .61 RPM
SRP007412_cerebellum 42 .77 RPM
SRP007412_heart 15 .16 RPM
SRP007412_kidney 32 .25 RPM
SRP007412_liver 19 .18 RPM
SRP007412_testis 24 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018082 ortholog_one2one 1 retrogene
retro_cfam_1480,
Callithrix jacchus ENSCJAG00000020963 ortholog_one2one 6 retrogenes
retro_cjac_1338, retro_cjac_2471, retro_cjac_3342, retro_cjac_3390, retro_cjac_3934, retro_cjac_990,
Cavia porcellus ENSCPOG00000001946 ortholog_one2one 2 retrogenes
retro_cpor_280, retro_cpor_283,
Dasypus novemcinctus ENSDNOG00000011166 ortholog_one2one 1 retrogene
retro_dnov_2298,
Homo sapiens ENSG00000086589 ortholog_one2one 2 retrogenes
retro_hsap_3465, retro_hsap_4273,
Gorilla gorilla ENSGGOG00000012947 ortholog_one2one 2 retrogenes
retro_ggor_2337, retro_ggor_2859,
Myotis lucifugus ENSMLUG00000009040 possible_ortholog 2 retrogenes
retro_mluc_1453, retro_mluc_153,
Macaca mulatta ENSMMUG00000020683 ortholog_one2one 4 retrogenes
retro_mmul_1199, retro_mmul_1348, retro_mmul_1553, retro_mmul_1762,
Monodelphis domestica ENSMODG00000009574 possible_ortholog 1 retrogene
retro_mdom_186,
Pongo abelii ENSPPYG00000015955 ortholog_one2one 4 retrogenes
retro_pabe_1412, retro_pabe_1594, retro_pabe_2861, retro_pabe_3486,
Tarsius syrichta ENSTSYG00000003939 ortholog_one2one 3 retrogenes
retro_tsyr_1090, retro_tsyr_1187, retro_tsyr_1231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2348 66.96 52.86
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2. retro_ptro_2898 71.37 60.24
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Download FASTA sequences of all ENSPTRG00000017423 retrocopies