RetrogeneDB ID: | retro_tsyr_1231 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_357899:321..984(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000006215 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBM22 | ||
Ensembl ID: | ENSTSYG00000003939 | ||
Aliases: | None | ||
Description: | RNA binding motif protein 22 [Source:HGNC Symbol;Acc:25503] |
Percent Identity: | 87.11 % |
Parental protein coverage: | 52.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKE-CKICARPFTVFRWC-PGVRMRFKKT |
M..SLGSN.YNRQNWED.DFP.LCQTCLGEN.Y.RMTKEKYGKE..KICARPFTVFRWC.PG.R.RFKKT | |
Retrocopy | MVASLGSNSYNRQNWEDSDFPTLCQTCLGENSYTRMTKEKYGKE<MKICARPFTVFRWC<PGDRLRFKKT |
Parental | EVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQNMEREISNSDGTRPVGMLG |
E.CQTCSKLKNVCQTCLLDLEYGLPIQV.DAGLSFKDDMP.SDVNKEYYTQNMEREISNSDGTRPVGMLG | |
Retrocopy | EGCQTCSKLKNVCQTCLLDLEYGLPIQVCDAGLSFKDDMPRSDVNKEYYTQNMEREISNSDGTRPVGMLG |
Parental | KATSTSDMLLKLARTTPYYKRNRPHICSFWVKG-ECKRGEECPYXXXXXXXXXXXXADQNIKDRYYGIND |
KATSTSDMLLKLARTTPYYKRNRPHICSFWVKG..CKRGEECPY............ADQNIKDRYYGIND | |
Retrocopy | KATSTSDMLLKLARTTPYYKRNRPHICSFWVKG<VCKRGEECPYRHEKPTDPDDTLADQNIKDRYYGIND |
Parental | PVADKLLKRASTMPR |
PVADKLLKRASTMPR | |
Retrocopy | PVADKLLKRASTMPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018082 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020963 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000001946 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011166 | 1 retrocopy | |
Homo sapiens | ENSG00000086589 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000012947 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009040 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020683 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000009574 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015955 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000017423 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000003939 | 3 retrocopies |
retro_tsyr_1090, retro_tsyr_1187, retro_tsyr_1231 ,
|