Parental gene:

RPL5, ENSCAFG00000020150

Aliases:None
Description:ribosomal protein L5 [Source:HGNC Symbol;Acc:10360]
Organism:Dog (Canis familiaris)
Coordinates:6:56203395..56214876(-)


>ENSCAFG00000020150
AAGGGGTTTGTTAAGGTTGTCAAGAATAAGGCTTACTTCAAGAGATACCAAGTGAAATTTAGAAGACGACGAGAGGGTAA
AACTGATTATTATGCCCGGAAACGCTTGGTAATTCAGGACAAAAATAAGTACAACACACCTAAATACAGGATGATAGTTC
GTGTAACCAACCGAGATATCATTTGTCAGATTGCTTATGCCCGCATAGAAGGAGACATGATCGTTTGTGCGGCTTATGCT
CATGAACTCCCAAAGTATGGTGTGAAGGTTGGCCTGACAAATTATGCTGCAGCATATTGTACCGGCCTGCTGCTGGCCCG
CAGGCTCCTCAATAGATTTGGCATGGACAAGATCTATGAAGGCCAAGTGGAAGTGACTGGAGATGAATACAATGTGGAAA
GCATTGATGGTCAACCTGGTGCCTTCACCTGCTATTTGGATGCAGGGCTTGCCAGAACTACCACTGGAAATAAAGTTTTT
GGGGCCCTCAAGGGAGCAGTGGACGGAGGCCTGTCTATCCCTCACAGTACCAAACGATTCCCTGGTTATGATTCAGAAAG
CAAGGAATTCAATGCAGAAGTTCATCGAAAGCACATCATGGGTCAGAATGTTGCAGATTATATGCGTTACCTAATGGAGG
AAGATGAAGATGCTTACAAGAAACAATTCTCTCAATATATAAAGAACAACGTTACTCCAGACATGATGGAGGAGATGTAT
AAGAAAGCGCACGCTGCTATACGAGAGAATCCCGTCTATGAGAAGAAACCTAAGAAAGAAGTTAAGAAGAAGAGGTGGAA
CCGTCCTAAGATGTCTCTTGCCCAAAAGAAAGATCGGGTAGCTCAGAAGAAGGCAAGCTTCCTTAGAGCTCAGGAGCGGG
CTGCTGAGAGCTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 296 .85 RPM
SRP017611_brain 121 .23 RPM
SRP017611_kidney 549 .17 RPM
SRP017611_liver 265 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Felis catus ENSFCAG00000024680 ortholog_one2one 5 retrogenes
retro_fcat_281, retro_fcat_304, retro_fcat_453, retro_fcat_458, retro_fcat_463,
Loxodonta africana ENSLAFG00000011916 ortholog_one2one 6 retrogenes
retro_lafr_1025, retro_lafr_1098, retro_lafr_302, retro_lafr_988, retro_lafr_989, retro_lafr_992,
Macropus eugenii ENSMEUG00000006361 ortholog_one2one 3 retrogenes
retro_meug_1168, retro_meug_1537, retro_meug_2146,
Myotis lucifugus ENSMLUG00000008956 ortholog_one2one 1 retrogene
retro_mluc_925,
Monodelphis domestica ENSMODG00000011635 ortholog_one2one 1 retrogene
retro_mdom_748,
Nomascus leucogenys ENSNLEG00000010500 possible_ortholog 2 retrogenes
retro_nleu_2102, retro_nleu_39,
Ornithorhynchus anatinus ENSOANG00000004669 ortholog_one2many 1 retrogene
retro_oana_97,
Procavia capensis ENSPCAG00000011865 ortholog_one2one 2 retrogenes
retro_pcap_159, retro_pcap_201,
Petromyzon marinus ENSPMAG00000002040 ortholog_one2one 1 retrogene
retro_pmar_23,
Pongo abelii ENSPPYG00000001152 possible_ortholog 32 retrogenes
retro_pabe_1053, retro_pabe_1219, retro_pabe_1274, retro_pabe_1307, retro_pabe_1331, retro_pabe_1501, retro_pabe_1918, retro_pabe_1931, retro_pabe_2019, retro_pabe_2123, retro_pabe_2238, retro_pabe_2457, retro_pabe_246, retro_pabe_247, retro_pabe_2640, retro_pabe_2641, retro_pabe_2658, retro_pabe_2813, retro_pabe_2841, retro_pabe_2909, retro_pabe_3247, retro_pabe_3320, retro_pabe_3360, retro_pabe_3534, retro_pabe_446, retro_pabe_447, retro_pabe_480, retro_pabe_51, retro_pabe_562, retro_pabe_572, retro_pabe_637, retro_pabe_740,
Sarcophilus harrisii ENSSHAG00000006417 ortholog_one2one 1 retrogene
retro_shar_202,
Tarsius syrichta ENSTSYG00000014038 ortholog_one2one 8 retrogenes
retro_tsyr_1462, retro_tsyr_1548, retro_tsyr_206, retro_tsyr_248, retro_tsyr_670, retro_tsyr_737, retro_tsyr_786, retro_tsyr_952,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_905 72.73 57.91
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2. retro_cfam_906 76.51 99.33
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3. retro_cfam_1505 95.97 99.66
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4. retro_cfam_1696 72.69 75.76
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Download FASTA sequences of all ENSCAFG00000020150 retrocopies