RetrogeneDB ID: | retro_cfam_905 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:58092964..58093475(+) | ||
Located in intron of: | ENSCAFG00000008426 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSCAFG00000020150 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 57.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQ-DKNKYNTPKYRMIVRVTNRDIICQIAYARIE |
GFVKVVKNKAY.KRYQVKFRR..EGKTDYYA.K.LVI..DKNK..T.KYRMIV..T..D.ICQI.YA.I. | |
Retrocopy | GFVKVVKNKAYLKRYQVKFRRQ-EGKTDYYA*KVLVIR<DKNKNSTSKYRMIVHIT--DVICQIVYAGIG |
Parental | GDMIVCAAYAHE-LPKYGVKVGLTNYAAAYCTGLLLARRLL--NRFGMDKIYEGQVEVTGDEYNVESIDG |
GD.I..AAY..E..PKY.VK..LTNYAAAY.TG.LLA.RL....RFG.D.IYEGQVE.T.DEYNVESIDG | |
Retrocopy | GDTILSAAYTYE<IPKYSVKFNLTNYAAAYSTGRLLAYRLIIISRFGLDSIYEGQVEMTEDEYNVESIDG |
Parental | QPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSI |
QPG.FTCYLDAGLARTTTGN.VFG.L.GA.D.G... | |
Retrocopy | QPGTFTCYLDAGLARTTTGNEVFGILMGAADRGFLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 296 .85 RPM |
SRP017611_brain | 0 .00 RPM | 121 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 549 .17 RPM |
SRP017611_liver | 0 .07 RPM | 265 .18 RPM |