RetrogeneDB ID: | retro_lafr_1025 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_6:29373472..29374249(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSLAFG00000011916 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 72.52 % |
Parental protein coverage: | 88.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | LVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL |
L.IQD.NKYNT.KYR.IV.VTNRDIICQ.AYA.IE.DMI...AYAH.LPKYGVKV..TN...AYC.GLL. | |
Retrocopy | LAIQD*NKYNTSKYRTIVHVTNRDIICQTAYACIERDMIIRTAYAHKLPKYGVKVDQTNHVVAYCSGLLP |
Parental | ARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPH |
A..LL..FGMDK.YEGQV.VT...Y.VESIDGQ.GAFTCY.DA.LARTT..N.V.GA.K..V..GLSIP. | |
Retrocopy | ACSLLSTFGMDKSYEGQVNVTRNKYKVESIDGQSGAFTCYVDADLARTTIRNTVLGAVKETVGEGLSIPY |
Parental | STKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHA |
STK.FP.YDSES.E.NAEVH.K.IMGQ.VADYM.YLMEEDEDAYKK.F..Y.KN..TP..M.EMYKK.H. | |
Retrocopy | STK*FPSYDSESRELNAEVHQKRIMGQDVADYMDYLMEEDEDAYKKRFYRYVKNHITPHTM-EMYKKTHV |
Parental | AIRENPVYEKKPKKDVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES |
AIR.NP.YEKKPKK...KK.WNRPKMSLAQK.D...QKKASFLRAQE.AAES | |
Retrocopy | AIRDNPIYEKKPKK--VKKKWNRPKMSLAQK*DWIVQKKASFLRAQEWAAES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |