RetrogeneDB ID: | retro_fcat_458 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:130622802..130623674(+) | ||
Located in intron of: | ENSFCAG00000004680 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL5 | ||
Ensembl ID: | ENSFCAG00000024680 | ||
Aliases: | None | ||
Description: | ribosomal protein L5 [Source:HGNC Symbol;Acc:10360] |
Percent Identity: | 75.59 % |
Parental protein coverage: | 99.66 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGD |
FVKVVKNKAY.KRYQVKFRR..EGKTDYYA.K.L...DK.KYNTPKYRMI..VTNRD.ICQIA.A..EGD | |
Retrocopy | FVKVVKNKAYLKRYQVKFRR**EGKTDYYAWKHLETWDKSKYNTPKYRMIAHVTNRDTICQIACALTEGD |
Parental | MIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVT-GDEYNVESIDGQPGA |
.IVCAA..H.LPK.GVK.GL.N...AYCTG.LLA.RL.NR..MDKIYEGQVEVT..DE.NVESID.Q.GA | |
Retrocopy | VIVCAAHVHKLPKHGVKAGLRN--*AYCTGPLLACRLVNRLDMDKIYEGQVEVT<RDEHNVESIDAQHGA |
Parental | FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRY- |
F.CYLD.GLARTTTG.K..GA.KGAVD.GLSIPHSTKRFP.YDSESKEF.AE.H.KHI.GQN.ADYM.Y. | |
Retrocopy | FACYLDKGLARTTTGDKALGAPKGAVDRGLSIPHSTKRFPDYDSESKEFSAEGHEKHIIGQNMADYMCY< |
Parental | LMEEDEDAYKKQFSQY-IKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKK-RWNRPKMSLAQKKD |
L.EEDED.Y.KQFS....KNN.TPDMMEEM.KKAH.A..ENP.YEKKPKK.VKK..RWN.PKMSLA..KD | |
Retrocopy | LVEEDEDTYEKQFSEH<PKNNITPDMMEEMCKKAHSATQENPIYEKKPKK-VKKR<RWNHPKMSLAWNKD |
Parental | RVAQKKASFLRAQERAAES |
.VAQKK...LRAQERAAES | |
Retrocopy | QVAQKKQASLRAQERAAES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 154 .37 RPM |
SRP017611_kidney | 0 .10 RPM | 701 .62 RPM |
SRP017611_liver | 0 .10 RPM | 484 .93 RPM |