Parental gene: | CCT6A, ENSCJAG00000021279 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 17:74561247..74576204(+) |
>ENSCJAG00000021279
ATGGCGGCGGTGAAGACCCTGAACCCCAAGGCCGAGGTGGCCCGAGCACAGGCGGCGCTGGCGGTCAACATCAGCGCGGC
GCGGGGCCTGCAGGACGTGCTGAGGACGAACCTGGGGCCCAAGGGCACCATGAAGATGCTTGTTTCTGGCGCCGGAGACA
TCAAGCTTACTAAAGACGGCAACGTGCTGCTTCACGAAATGCAAATTCAGCACCCAACAGCTTCCTTAATAGCAAAGGTA
GCAACAGCCCAGGATGATATAACTGGTGATGGTACGACTTCCAACGTCCTGATCATTGGAGAGCTGCTGAAACAAGCGGA
CCTCTACGTTTCTGAAGGCCTTCATCCCAGAATAATTACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTCAGTTTT
TGGAAGAAGTCAAAGTGAGCAAAGAGATGGACAGGGAAACACTTATCGATGTGGCCAGAACGTCTCTTCGTACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACGGAGGCTGTAGTGGACTCCATTTTGGCCATTAAGAAACAAGATGAGCCTGTTGA
TCTCTTCATGATTGAGATTATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ATGGAGCACGGCATCCTGAAATGAAGAAAAGGGTGGAAGATGCATACATCCTCACATGTAATGTGTCACTAGAATATGAA
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAAAAACTTGTAAAAGCTGAAAGAAAATTCAT
TGAAGATAGAATTAAAAAAATAATAGAACTGAAAAGGAAAGTCTGTGGTGATTCAGATAAAGGATTTGTTGTTATTAATC
AAAAGGGAATCGACCCGTTTTCCTTGGATGCTCTTTCAAAGGAAGGCATAGTTGCTCTGCGCAGAGCTAAGAGGAGAAAC
ATGGAGAGGTTGACTCTTGCTTGTGGAGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACTGCTTGGGACATGC
AGGCCTTGTATATGAGTATACATTGGGAGAAGAGAAATTCACCTTTATTGAGAAATGTAACAATCCTCGTTCTGTCACAT
TATTGATCAAAGGACCAAATAAGCACACACTCACTCAGATCAAAGATGCAGTAAGGGATGGCTTGAGGGCTGTCAAAAAT
GCTATCGATGATGGCTGTGTGGTTCCAGGTGCTGGTGCTGTGGAAGTGGCAATGGCAGAAGCCCTGATGAAATACAAGCC
CAGTGTCAAGGGCAGGGCACAGCTTGGCGTCCAAGCATTTGCTGATGCATTGCTCATTATTCCCAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGGAC
CTCAACACAGGTGAGCCAATGGTAGCAGCAGAAGTAGGCGTATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCCACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCACTGAAAGGTTGA
ATGGCGGCGGTGAAGACCCTGAACCCCAAGGCCGAGGTGGCCCGAGCACAGGCGGCGCTGGCGGTCAACATCAGCGCGGC
GCGGGGCCTGCAGGACGTGCTGAGGACGAACCTGGGGCCCAAGGGCACCATGAAGATGCTTGTTTCTGGCGCCGGAGACA
TCAAGCTTACTAAAGACGGCAACGTGCTGCTTCACGAAATGCAAATTCAGCACCCAACAGCTTCCTTAATAGCAAAGGTA
GCAACAGCCCAGGATGATATAACTGGTGATGGTACGACTTCCAACGTCCTGATCATTGGAGAGCTGCTGAAACAAGCGGA
CCTCTACGTTTCTGAAGGCCTTCATCCCAGAATAATTACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTCAGTTTT
TGGAAGAAGTCAAAGTGAGCAAAGAGATGGACAGGGAAACACTTATCGATGTGGCCAGAACGTCTCTTCGTACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACGGAGGCTGTAGTGGACTCCATTTTGGCCATTAAGAAACAAGATGAGCCTGTTGA
TCTCTTCATGATTGAGATTATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ATGGAGCACGGCATCCTGAAATGAAGAAAAGGGTGGAAGATGCATACATCCTCACATGTAATGTGTCACTAGAATATGAA
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAAAAACTTGTAAAAGCTGAAAGAAAATTCAT
TGAAGATAGAATTAAAAAAATAATAGAACTGAAAAGGAAAGTCTGTGGTGATTCAGATAAAGGATTTGTTGTTATTAATC
AAAAGGGAATCGACCCGTTTTCCTTGGATGCTCTTTCAAAGGAAGGCATAGTTGCTCTGCGCAGAGCTAAGAGGAGAAAC
ATGGAGAGGTTGACTCTTGCTTGTGGAGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACTGCTTGGGACATGC
AGGCCTTGTATATGAGTATACATTGGGAGAAGAGAAATTCACCTTTATTGAGAAATGTAACAATCCTCGTTCTGTCACAT
TATTGATCAAAGGACCAAATAAGCACACACTCACTCAGATCAAAGATGCAGTAAGGGATGGCTTGAGGGCTGTCAAAAAT
GCTATCGATGATGGCTGTGTGGTTCCAGGTGCTGGTGCTGTGGAAGTGGCAATGGCAGAAGCCCTGATGAAATACAAGCC
CAGTGTCAAGGGCAGGGCACAGCTTGGCGTCCAAGCATTTGCTGATGCATTGCTCATTATTCCCAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGGAC
CTCAACACAGGTGAGCCAATGGTAGCAGCAGAAGTAGGCGTATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCCACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCACTGAAAGGTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 80 .13 RPM |
| SRP051959_skeletal_muscle | 125 .50 RPM |
| SRP051959_lymph_node | 92 .44 RPM |
| SRP051959_lung | 67 .40 RPM |
| SRP051959_liver | 119 .96 RPM |
| SRP051959_kidney | 69 .35 RPM |
| SRP051959_heart | 76 .44 RPM |
| SRP051959_colon | 60 .17 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016077 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000010149 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000000654 | ortholog_one2one | 3 retrogenes | |
| Dipodomys ordii | ENSDORG00000001249 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000027654 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000146731 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011439 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000012791 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015272 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000006565 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015664 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000017674 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000015532 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025820 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000019206 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000001421 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000000923 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000015158 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_580 | 89.67 | 73.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1320 | 71.43 | 56.40 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000021279 retrocopies