RetrogeneDB ID: | retro_fcat_320 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:43004052..43005642(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000023308 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000027654 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ |
MAAVKTLNPKAEVARAQAALAVNIS.ARGLQDVLRTNLGPK.TMKMLVSGAGDIKLTKDGNVLLHEMQIQ | |
Retrocopy | MAAVKTLNPKAEVARAQAALAVNISVARGLQDVLRTNLGPKDTMKMLVSGAGDIKLTKDGNVLLHEMQIQ |
Parental | HPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVS |
HPTASLIAK.A.AQDDITGDGTTSNVLIIGELLKQ.DLYISEGLHPRIITEGFEAAKEK.LQFLEQVKVS | |
Retrocopy | HPTASLIAKLAIAQDDITGDGTTSNVLIIGELLKQVDLYISEGLHPRIITEGFEAAKEKVLQFLEQVKVS |
Parental | KEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGL |
KEMDRETLIDVARTSLRTKVHAELADVLTEAVVD.IL.IKKQDEPIDLFMVEI.EMKHKSETDTSLIRGL | |
Retrocopy | KEMDRETLIDVARTSLRTKVHAELADVLTEAVVDFILVIKKQDEPIDLFMVEIIEMKHKSETDTSLIRGL |
Parental | VLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEV-NSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKK |
VLDHGA.HPDMKKR.EDAYILTCNVSLEYEKT......F.....E.REKLVKAERKFI.DRVKKIIELKK | |
Retrocopy | VLDHGAQHPDMKKRAEDAYILTCNVSLEYEKTSE>SGFFYKSAEE-REKLVKAERKFIDDRVKKIIELKK |
Parental | KVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGVALNSFDDLNPDCLGHAGL |
KVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGVALNSFDDLNPDCLGHAGL | |
Retrocopy | KVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGVALNSFDDLNPDCLGHAGL |
Parental | VYEYTLGEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIK-DAIRDGLRAVKNAIDDGCVVPGAGAVEVAM |
VYEYTLGEEKFTFIEKCNNP.SVTLLVKGPNKHTLTQIK.DAIRDGLRAVKNAIDDGCVVPGAGAVEVAM | |
Retrocopy | VYEYTLGEEKFTFIEKCNNPHSVTLLVKGPNKHTLTQIK<DAIRDGLRAVKNAIDDGCVVPGAGAVEVAM |
Parental | AEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMV |
AEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMV | |
Retrocopy | AEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMV |
Parental | AAEVGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG |
AAEVGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG | |
Retrocopy | AAEVGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 106 .97 RPM |
SRP017611_kidney | 0 .72 RPM | 108 .21 RPM |
SRP017611_liver | 0 .20 RPM | 71 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016077 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010149 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000654 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000021279 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000001249 | 1 retrocopy | |
Felis catus | ENSFCAG00000027654 | 2 retrocopies |
retro_fcat_1102, retro_fcat_320 ,
|
Homo sapiens | ENSG00000146731 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000011439 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012791 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015272 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006565 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015664 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017674 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000015532 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025820 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019206 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001421 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000923 | 1 retrocopy |