Parental gene:

CCT6A, ENSPPYG00000025820

Aliases:CCT6A, CCT6
Description:T-complex protein 1 subunit zeta [Source:RefSeq peptide;Acc:NP_001125308]
Organism:Orangutan (Pongo abelii)
Coordinates:7:27739338..27751917(-)


>ENSPPYG00000025820
ATGGCGGCTGTGAAGACCCTGAACCCCAAGGCCGAGGTGGCCCGAGCGCAGGCGGCGCTGGCAGTCAACATCAGCGCGGC
GCGGGGTCTGCAGGACGTGCTAAGGACCAACCTGGGGCCCAAGGGCACCATGAAGATGCTCGTTTCTGGCGCTGGAGACA
TCAAACTTACTAAAGACGGCAATGTGTTGCTTCACGAAATGCAAATTCAACACCCAACAGCTTCCTTAATAGCAAAGGTA
GCAACAGCCCAGGATGATATAACTGGTGACGGTACGACTTCCAATGTCCTAATCATTGGAGAGCTGCTGAAACAGGCGGA
TCTCTACATTTCTGAAGGCCTTCATCCCAGAATAATCACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTCAGTTTT
TGGAAGAAGTCAAAGTAAGCAGAGAGATGGATAGGGAAACACTTATAGATGTGGCCAGAACATCTCTTCGTACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACAGAGGCTGTAGTGGACTCCATTTTGGCCATTAAAAAGCAAGATGAACCTATTGA
TCTCTTCATGATTGAGATCATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ACGGAGCACGGCATCCTGATATGAAGAAAAGGGTGGAGGATGCATACATCCTCACTTGTAACGTGTCATTAGAGTATGAA
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAAAAACTCGTGAAAGCTGAAAGAAAATTCAT
TGAAGATAGAGTTAAAAAAATAATAGAACTGAAAAGGAAAGTTTGTGGCGATTCAGATAAAGGATTTGTTGTTATTAATC
AGAAAGGAATTGACCCCTTTTCCTTAGATGCTCTTTCAAAAGAAGGCATAGTCGCTCTGCGCAGAGCTAAAAGGAGAAAC
ATGTTCAGGCTGACTCTTGCTTGTGGTGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACCAGTTGGGACATGC
AGGACTTGTATATGAGTATACATCTGGAGAAGAGAAGTTTACCTTTATTGAGAAATGTAACAACCCTCGTTCTGTCACAT
TATTGATCAAAGGACCAAATAAGCACACACTCACTCAGATCAAAGATGCAGTGAGGGATGGCTTGAGGGCTGTCAAAAAT
GCTATTGATGATGGCTGTGTGGTTCCAGGTGCTGGTGCTGTGGAAGTGGCGATGGCAGAAGCCCTGATTAAACATAAGCC
CAGTGTAAAGGGCAGGGCACAGCTTGGAGTCCAAGCATTTGCTGATGCATTGCTCATTATTCCCAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGGAC
CTGAACACAGGTGAGCCAATGGTAGCAGCAGAAGTAGGCGTATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCCACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCTCTGAAAGGT

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 94 .33 RPM
SRP007412_cerebellum 82 .32 RPM
SRP007412_heart 55 .90 RPM
SRP007412_kidney 127 .65 RPM
SRP007412_liver 61 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016077 ortholog_many2many 1 retrogene
retro_amel_855,
Canis familiaris ENSCAFG00000010149 ortholog_one2many 1 retrogene
retro_cfam_431,
Choloepus hoffmanni ENSCHOG00000000654 ortholog_one2many 3 retrogenes
retro_chof_1183, retro_chof_1193, retro_chof_150,
Callithrix jacchus ENSCJAG00000021279 ortholog_one2one 2 retrogenes
retro_cjac_1320, retro_cjac_580,
Dipodomys ordii ENSDORG00000001249 ortholog_one2many 1 retrogene
retro_dord_617,
Felis catus ENSFCAG00000027654 ortholog_many2many 2 retrogenes
retro_fcat_1102, retro_fcat_320,
Homo sapiens ENSG00000146731 ortholog_one2one 2 retrogenes
retro_hsap_2741, retro_hsap_3290,
Gorilla gorilla ENSGGOG00000011439 ortholog_one2many 1 retrogene
retro_ggor_133,
Loxodonta africana ENSLAFG00000012791 ortholog_one2many 1 retrogene
retro_lafr_808,
Macaca mulatta ENSMMUG00000015272 ortholog_one2one 1 retrogene
retro_mmul_2582,
Monodelphis domestica ENSMODG00000006565 ortholog_one2many 1 retrogene
retro_mdom_1330,
Nomascus leucogenys ENSNLEG00000015664 ortholog_one2one 1 retrogene
retro_nleu_1355,
Oryctolagus cuniculus ENSOCUG00000017674 ortholog_one2many 1 retrogene
retro_ocun_468,
Procavia capensis ENSPCAG00000015532 ortholog_one2many 1 retrogene
retro_pcap_263,
Pan troglodytes ENSPTRG00000019206 ortholog_one2one 2 retrogenes
retro_ptro_1854, retro_ptro_2225,
Pteropus vampyrus ENSPVAG00000001421 ortholog_one2many 1 retrogene
retro_pvam_663,
Rattus norvegicus ENSRNOG00000000923 ortholog_many2many 1 retrogene
retro_rnor_2226,
Tursiops truncatus ENSTTRG00000015158 ortholog_one2many 1 retrogene
retro_ttru_1552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2719 85.68 89.27
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Download FASTA sequences of all ENSPPYG00000025820 retrocopies