Parental gene:

CCT6, ENSOCUG00000017674

Aliases:None
Description:chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A), mRNA [Source:RefSeq mRNA;Acc:NM_001082039]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018788:807132..817397(-)


>ENSOCUG00000017674
ATGGCGGCCGTGAAGACCCTGAATCCCAAGGCCGAGGTGGCCAGAGCCCAGGCGGCGTTGGCGGTCAATATCAGCGCGGC
ACGGGGACTGCAGGACGTGCTGAGGACCAACTTGGGGCCTAAGGGCACCATGAAGATGCTTGTTTCCGGCGCTGGCGATA
TCAAGCTCACCAAAGACGGCAACGTGCTGCTGCATGAAATGCAAATTCAACACCCAACTGCCTCCTTAATAGCAAAAGTA
GCAACAGCCCAGGATGACATAACTGGCGATGGTACTACTTCAAATGTCCTTATCATTGGAGAGTTACTGAAGCAGGCGGA
TCTCTACATTTCTGAGGGTCTTCATCCCAGAATAATTACTGAAGGGTTTGAAGCTGCAAAGGAAAAAGCCCTTCAGGTTT
TGGAACAAATCAAAGTTAGCAGAGAGATGGACAGGGAAACACTTATAGATGTGGCCAGGACCTCTCTGCGTACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACAGAGGCTGTAGTGGACTCCATTTTGGCCATTAAAAAACAAGATGAACCTATTGA
CCTCTTCATGGTTGAGATCATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGGGGACTTGTTTTGGACC
ATGGGGCACGGCATCCAGATATGAAGAAAAGAGTAGAAGATGCGTACATCCTCACATGCAATGTGTCATTGGAATATGAA
AAAACGGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAAAAACTAGTAAAAGCTGAAAGAAAATTCAT
TGAAGATAGAGTTAAAAAAATAGTAGAACTGAAAAAGAAAGTCTGTGGTGATTCAGATAAAGGATTTGTTGTTATTAATC
AAAAGGGAATTGACCCCTTTTCCTTAGATGCTCTTGCAAAAGAAGGCATAGTAGCTCTGCGCAGGGCTAAAAGGAGAAAT
ATGGAGAGGCTGACTCTTGCTTGCGGTGGAGTACCTCTGAATTCTCTAGATGACCTAAATCCTGATTGTTTGGGACATGC
AGGACTTGTGTATGAATATACATTGGGAGAAGAGAAGTTCACCTTTATTGAGAAATGTAACAATCCTCGCTCTGTCACAT
TATTGGTCAAAGGACCAAATAAGCACACACTTACTCAAATCAAAGATGCGATAAGAGATGGATTGAGGGCTGTCAAAAAT
GCTATTGATGATGGCTGTGTGGTTCCAGGTGCTGGTGCAGTAGAAGTGGCAATGGCAGAAGCCCTGATAAAATACAAATC
CAGTGTAAAGGGCAGGGCCCAACTTGGAGTTCAAGCATTTGCTGATGCATTGCTCATTATTCCCAAGGTTCTTGCTCAGA
ACTCTGGCTTTGACCTCCAGGAAACATTAGTTAAAATTCGAACAGAACATTCTGAATCAGGTCAACTTGTGGGTGTGGAC
TTGAACACAGGGGAGCCAATGGTGGCAGCAGAAGTAGGCATTTGGGATAACTATTGTGTGAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCAACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCTCTCAAAGGTTGA

Library Parental gene expression (RPM)
SRP017611_liver 28 .59 RPM
SRP017611_kidney 72 .17 RPM
SRP017611_brain 73 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016077 ortholog_one2many 1 retrogene
retro_amel_855,
Canis familiaris ENSCAFG00000010149 ortholog_one2one 1 retrogene
retro_cfam_431,
Choloepus hoffmanni ENSCHOG00000000654 ortholog_one2one 3 retrogenes
retro_chof_1183, retro_chof_1193, retro_chof_150,
Callithrix jacchus ENSCJAG00000021279 ortholog_one2one 2 retrogenes
retro_cjac_1320, retro_cjac_580,
Dipodomys ordii ENSDORG00000001249 ortholog_one2one 1 retrogene
retro_dord_617,
Felis catus ENSFCAG00000027654 ortholog_one2many 2 retrogenes
retro_fcat_1102, retro_fcat_320,
Homo sapiens ENSG00000146731 ortholog_one2one 2 retrogenes
retro_hsap_2741, retro_hsap_3290,
Gorilla gorilla ENSGGOG00000011439 ortholog_one2many 1 retrogene
retro_ggor_133,
Loxodonta africana ENSLAFG00000012791 ortholog_one2one 1 retrogene
retro_lafr_808,
Macaca mulatta ENSMMUG00000015272 ortholog_one2many 1 retrogene
retro_mmul_2582,
Monodelphis domestica ENSMODG00000006565 ortholog_one2one 1 retrogene
retro_mdom_1330,
Nomascus leucogenys ENSNLEG00000015664 ortholog_one2one 1 retrogene
retro_nleu_1355,
Procavia capensis ENSPCAG00000015532 ortholog_one2one 1 retrogene
retro_pcap_263,
Pongo abelii ENSPPYG00000025820 ortholog_one2many 1 retrogene
retro_pabe_2719,
Pan troglodytes ENSPTRG00000019206 ortholog_one2one 2 retrogenes
retro_ptro_1854, retro_ptro_2225,
Pteropus vampyrus ENSPVAG00000001421 ortholog_one2one 1 retrogene
retro_pvam_663,
Rattus norvegicus ENSRNOG00000000923 ortholog_one2many 1 retrogene
retro_rnor_2226,
Tursiops truncatus ENSTTRG00000015158 ortholog_one2one 1 retrogene
retro_ttru_1552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_468 100.00 58.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSOCUG00000017674 retrocopies