Parental gene:

Cct6a, ENSRNOG00000000923

Aliases:None
Description:T-complex protein 1 subunit zeta [Source:RefSeq peptide;Acc:NP_001028856]
Organism:Rat (Rattus norvegicus)
Coordinates:12:32433337..32443781(-)


>ENSRNOG00000000923
ATGGCGGCGGTGAAGACCCTAAATCCCAAAGCCGAGGTGGCCCGGGCGCAGGCAGCGCTGGCGGTGAACATCAGCGCGGC
ACGGGGCCTGCAGGATGTTCTGAGGACCAACTTGGGCCCTAAAGGCACCATGAAGATGCTTGTATCTGGTGCTGGAGACA
TCAAACTTACTAAAGATGGCAATGTGCTACTTCATGAAATGCAAATTCAACACCCAACAGCCTCTTTGATAGCAAAAGTG
GCTACAGCGCAGGATGACATAACCGGCGATGGCACTACATCCAATGTCCTCATCATCGGAGAGCTGCTCAAACAAGCGGA
CCTCTACATTTCTGAAGGTCTCCATCCCAGAATAATAACCGAAGGCTTTGAAGCTGCAAAGGAAAAGGCACTCCAGTTTT
TGGAACAAGTCAAAGTAAGCAAAGAGATGGACAGAGAAACACTCATCGATGTGGCCAGGACATCTCTGCGGACTAAAGTT
CATGCTGAGCTTGCAGATGTCTTGACAGAGGCTGTGGTGGACTCCATTTTGGCCATTAGGAAAAAAGATGAGCCCATTGA
CCTCTTCATGGTTGAGATCATGGAGATGAAGCATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGATC
ATGGAGCACGGCATCCTGATATGAAGAAAAGAGTAGAAAATGCCTACATCCTCACATGCAACGTGTCCTTGGAGTATGAG
AAGACAGAAGTGAATTCTGGGTTTTTTTACAAGAGTGCAGAAGAGAGAGAGAAACTAGTAAAGGCTGAAAGAAAATTCAT
TGAAGATAGAGTTAAAAAAATCGTAGAACTGAAGAAGAAAGTCTGTGGTGATTCAGATAAAGGATTTGTCGTTATTAATC
AAAAGGGGATTGACCCCTTCTCTTTAGATGCCCTCGCGAAAGAAGGCATCGTAGCTCTGCGCAGAGCCAAGAGGAGAAAC
ATGGAGAGGCTGACTCTTGCTTGTGGTGGGATAGCTCTGAACTCCTTTGATGACCTGAATCCTGACTGTTTGGGACATGC
AGGGCTTGTCTATGAGTATACATTGGGTGAGGAGAAGTTCACCTTTATTGAGAAATGTAACAATCCCCGTTCTGTCACTT
TACTGGTTAAAGGACCAAACAAGCACACGCTGACTCAGATCAAGGATGCAATCAGAGATGGCTTGAGGGCTGTCAAAAAT
GCTATTGATGATGGCTGTGTTGTCCCGGGTGCAGGTGCAGTTGAAGTGGCACTGGCAGAGGCTCTGATTAAATACAAGCC
CAGTGTGAAGGGCAGAGCTCAGCTTGGGGTCCAGGCATTTGCAGATGCCTTGCTCATCATTCCCAAGGTTCTTGCGCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAGTTCAAGCTGAACATTCAGAATCCGGTCAGCTTGTGGGTGTGGAT
CTAAACACAGGTGAGCCAATGGTGGCCGCAGAAATGGGTGTGTGGGATAACTACTGTGTGAAGAAGCAGCTGCTTCACTC
CTGTACTGTGATCGCCACCAACATTCTCCTGGTTGACGAGATCATGAGAGCTGGGATGTCCTCTCTGAAGGGCTGA

Library Parental gene expression (RPM)
SRP017611_liver 55 .54 RPM
SRP017611_kidney 135 .17 RPM
SRP017611_brain 105 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016077 ortholog_many2many 1 retrogene
retro_amel_855,
Canis familiaris ENSCAFG00000010149 ortholog_one2many 1 retrogene
retro_cfam_431,
Choloepus hoffmanni ENSCHOG00000000654 ortholog_one2many 3 retrogenes
retro_chof_1183, retro_chof_1193, retro_chof_150,
Callithrix jacchus ENSCJAG00000021279 ortholog_one2many 2 retrogenes
retro_cjac_1320, retro_cjac_580,
Dipodomys ordii ENSDORG00000001249 ortholog_one2many 1 retrogene
retro_dord_617,
Felis catus ENSFCAG00000027654 ortholog_many2many 2 retrogenes
retro_fcat_1102, retro_fcat_320,
Homo sapiens ENSG00000146731 ortholog_one2many 2 retrogenes
retro_hsap_2741, retro_hsap_3290,
Gorilla gorilla ENSGGOG00000011439 ortholog_many2many 1 retrogene
retro_ggor_133,
Loxodonta africana ENSLAFG00000012791 ortholog_one2many 1 retrogene
retro_lafr_808,
Macaca mulatta ENSMMUG00000015272 ortholog_many2many 1 retrogene
retro_mmul_2582,
Monodelphis domestica ENSMODG00000006565 ortholog_one2many 1 retrogene
retro_mdom_1330,
Nomascus leucogenys ENSNLEG00000015664 ortholog_one2many 1 retrogene
retro_nleu_1355,
Oryctolagus cuniculus ENSOCUG00000017674 ortholog_one2many 1 retrogene
retro_ocun_468,
Procavia capensis ENSPCAG00000015532 ortholog_one2many 1 retrogene
retro_pcap_263,
Pongo abelii ENSPPYG00000025820 ortholog_many2many 1 retrogene
retro_pabe_2719,
Pan troglodytes ENSPTRG00000019206 ortholog_one2many 2 retrogenes
retro_ptro_1854, retro_ptro_2225,
Pteropus vampyrus ENSPVAG00000001421 ortholog_one2many 1 retrogene
retro_pvam_663,
Tursiops truncatus ENSTTRG00000015158 ortholog_one2many 1 retrogene
retro_ttru_1552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2226 86.89 60.64
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Download FASTA sequences of all ENSRNOG00000000923 retrocopies