RetrogeneDB ID: | retro_dord_617 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_41156:2785..3707(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cct6a | ||
Ensembl ID: | ENSDORG00000001249 | ||
Aliases: | None | ||
Description: | chaperonin containing Tcp1, subunit 6a (zeta) [Source:MGI Symbol;Acc:MGI:107943] |
Percent Identity: | 75.96 % |
Parental protein coverage: | 58.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | AARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSN |
AA....DVLRTN.GPKGT.KML.SG.GDI.LTKD.N.LLH.MQIQ.P.AS.IA.VA......TGDGTTSN | |
Retrocopy | AANMGMDVLRTNPGPKGTVKMLISGTGDITLTKDSNMLLHKMQIQNPAASVIARVA--HNGATGDGTTSN |
Parental | VLIIGELLKQADLYISEGLHPRIITEGFEAAKDKALQFLEQIKVNKEMDRETLIDVARTSLRTKVHAELA |
VLIIGELLKQADLYISE.LH.RIITEGFEAAK.KAL..LEQIKVN.E.DRETL....R.S..T.VHAE.A | |
Retrocopy | VLIIGELLKQADLYISEELHLRIITEGFEAAKEKALPLLEQIKVNRETDRETLTEGDRKSFPTNVHAERA |
Parental | DVLTEAVVDSILAIKKKDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVENAYILTCNV |
DVL.EAVV..ILAI.K.DE.IDLFMVEIM.MKHKSETDTSLI.GLVLDHGA.HPDMK.R.EN.YILTC.V | |
Retrocopy | DVLAEAVVGAILAINKRDESIDLFMVEIMKMKHKSETDTSLIKGLVLDHGAQHPDMKSRAENVYILTCDV |
Parental | SLE-YEKTEVSSGFFYKSAEER-EKLVKAERKFIEDKV-KKVIELKRKVCGDSDKGFIVINQKGIDPFSL |
SL..YE.TE...GFFY.SAE.R.EKLVK.ERK..EDKV.KK.IELKRKVCGD.DKGFIVIN.K.I..FSL | |
Retrocopy | SLD<YERTEMNPGFFYESAEDR>EKLVKDERKCTEDKV>KKLIELKRKVCGDTDKGFIVINRKAINLFSL |
Parental | DAFAKEGIVALRRAKRRNMERLILACGGVALN |
DA.AKEGIVAL.RAKRRN.ERL.LACGGV.LN | |
Retrocopy | DARAKEGIVALCRAKRRNTERLTLACGGVTLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016077 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010149 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000654 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000021279 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000001249 | 1 retrocopy |
retro_dord_617 ,
|
Felis catus | ENSFCAG00000027654 | 2 retrocopies | |
Homo sapiens | ENSG00000146731 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000011439 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012791 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015272 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006565 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015664 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017674 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000015532 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025820 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019206 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001421 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000923 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015158 | 1 retrocopy |