Parental gene:

APOO, ENSCPOG00000004197

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_59:6568885..6595662(-)


>ENSCPOG00000004197
TCATTTCAGGTACTTCAAAAGTCTGTGGGCCCAGCCAGCCTGAGCTTGCTCACCTTCAGAGTCTATGCTGCACCAAAAAA
GGACTCGCCTCCCAAAAACTCCATGAAGGTCGATGAGCTGTCACTCTACTCAGTACCCGAGGGTCAGTCTAAATACATGG
AGGAGCCAAGGACTCAGCTTGAAGAAGGCATCTCACAGCTCCGACATCACTGTGAGCCGTATACAAATTGGTGCCAGGAA
ACATACTCCCAAACTAAACCCAAGATGCAAAGTTTGGTTCAGTGGGGATTAGACAGCTATGAATATCTCCAAAATGCTCC
CCCAGGTTTTTTTCCAAGACTTGGTGTTATTGGTTTTGCTGGTGTTGTTGGACTCCTTTTCACTAGAGGTTCAAAACTAA
AGAAGCTGGTGTATCCACCTGGCTTCATGGGATTAGCGGCCTCCATCTATTACCCACAACAAGCTATCACGTTCATCCAG
GTCAGTGGGGAGAAATTATATGATTGGGGCTTACGCGGATACATAGTCATAGAAGATTTGTGGAAGGAGAACTTTCAGAA
G

Library Parental gene expression (RPM)
SRP017611_liver 3 .74 RPM
SRP017611_kidney 13 .50 RPM
SRP017611_brain 11 .33 RPM
SRP040447_lung 1 .89 RPM
SRP040447_skeletal_muscle 12 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012749 ortholog_one2one 1 retrogene
retro_amel_1282,
Choloepus hoffmanni ENSCHOG00000000226 ortholog_one2one 2 retrogenes
retro_chof_2372, retro_chof_839,
Callithrix jacchus ENSCJAG00000004909 possible_ortholog 8 retrogenes
retro_cjac_1360, retro_cjac_1417, retro_cjac_1448, retro_cjac_1767, retro_cjac_1792, retro_cjac_1896, retro_cjac_2038, retro_cjac_2063,
Dasypus novemcinctus ENSDNOG00000006710 ortholog_one2one 1 retrogene
retro_dnov_2450,
Equus caballus ENSECAG00000013441 ortholog_one2one 1 retrogene
retro_ecab_145,
Echinops telfairi ENSETEG00000014150 ortholog_one2one 3 retrogenes
retro_etel_1052, retro_etel_516, retro_etel_711,
Felis catus ENSFCAG00000000029 ortholog_one2one 3 retrogenes
retro_fcat_1203, retro_fcat_1657, retro_fcat_1798,
Loxodonta africana ENSLAFG00000029070 ortholog_one2one 1 retrogene
retro_lafr_1114,
Macropus eugenii ENSMEUG00000014222 ortholog_one2one 1 retrogene
retro_meug_700,
Macaca mulatta ENSMMUG00000016361 possible_ortholog 4 retrogenes
retro_mmul_1584, retro_mmul_1886, retro_mmul_2051, retro_mmul_814,
Monodelphis domestica ENSMODG00000025554 ortholog_one2one 1 retrogene
retro_mdom_1510,
Mustela putorius furo ENSMPUG00000000109 ortholog_one2many 1 retrogene
retro_mputfur_109,
Mus musculus ENSMUSG00000079508 ortholog_one2many 1 retrogene
retro_mmus_282,
Otolemur garnettii ENSOGAG00000001960 ortholog_one2one 6 retrogenes
retro_ogar_1083, retro_ogar_1104, retro_ogar_2092, retro_ogar_2466, retro_ogar_2927, retro_ogar_3094,
Pteropus vampyrus ENSPVAG00000002530 ortholog_one2one 2 retrogenes
retro_pvam_128, retro_pvam_594,
Rattus norvegicus ENSRNOG00000046918 ortholog_one2one 4 retrogenes
retro_rnor_1022, retro_rnor_1986, retro_rnor_2096, retro_rnor_2308,
Sarcophilus harrisii ENSSHAG00000008734 ortholog_one2many 1 retrogene
retro_shar_125,
Sus scrofa ENSSSCG00000012174 ortholog_one2one 1 retrogene
retro_sscr_774,
Tupaia belangeri ENSTBEG00000014888 ortholog_one2one 6 retrogenes
retro_tbel_1153, retro_tbel_4004, retro_tbel_4261, retro_tbel_4698, retro_tbel_715, retro_tbel_96,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_309 91.44 99.47
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Download FASTA sequences of all ENSCPOG00000004197 retrocopies