RetrogeneDB ID: | retro_rnor_2096 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:208693237..208693805(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Apoo | ||
Ensembl ID: | ENSRNOG00000046918 | ||
Aliases: | Apoo, RGD1565289 | ||
Description: | apolipoprotein O [Source:RefSeq peptide;Acc:NP_001186107] |
Percent Identity: | 58.85 % |
Parental protein coverage: | 93.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SLSLLTFRVYAAPKKDSPHKSYMKIDELSLYSVPEGQSKYVEEPRTQLEENISELRHRCEPYTNLCQEIY |
SLSLLTFRVYAA..K.S.HK.Y.K.D.LS.YSVP.G..K..E.PRTQLEE.IS.L.H.CEPYT..CQE.. | |
Retrocopy | SLSLLTFRVYAALQKNSHHKNYVKVDKLSVYSVP-GGDKCKESPRTQLEEAISQL*HHCEPYTSCCQETC |
Parental | SHTK-PKVEHFVQWGVDNYNYLQNAP--PGFYPRLGVIGFAGFVGLLFARGSKIKKLVY---PPFFMGLG |
S.TK.PKVE....WG.DN....QNA...PGF.PRL.VIGFAGFV.L.FARGSKIKKLVY......F.G.. | |
Retrocopy | SQTK>PKVETYIWWGLDNFVHPQNASWIPGFPPRLIVIGFAGFVELTFARGSKIKKLVYTXXXXXFCGIR |
Parental | ASVYYPQQAITIAQITGEKLYDWGLRGYIVVEDLWKQHFQKPGNVKSSPGNK |
.................EKLY..GLRG.IVV.DL.K..FQKP.N.K..PGN. | |
Retrocopy | RLYLLSMKSLHLCSGQWEKLYGGGLRGCIVV-DL*KDEFQKPANAKNLPGNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .52 RPM |
SRP017611_kidney | 0 .00 RPM | 32 .31 RPM |
SRP017611_liver | 0 .00 RPM | 5 .51 RPM |