RetrogeneDB ID: | retro_dnov_1672 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_262082:44..671(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP1 | ||
Ensembl ID: | ENSDNOG00000008688 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
Percent Identity: | 80.18 % |
Parental protein coverage: | 59.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFK |
MDT.VIEGGLNVTLTI.LLMHGKEVGSIIGKKGESVK.MREES...INI.EGNCPERIIT.AG.TNA.FK | |
Retrocopy | MDTSVIEGGLNVTLTIWLLMHGKEVGSIIGKKGESVK-MREESDGHINI*EGNCPERIITWAGLTNATFK |
Parental | AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSL-IGKGGCKIKEIRESTGAQVQVAGDMLP |
AF.MII.KLEED.SSSMTNSTAASRPPVTLRL.V.ASQCGSL..GK.........EST.AQ.QVAGDM.P | |
Retrocopy | AFVMIIGKLEEDYSSSMTNSTAASRPPVTLRLLVHASQCGSL>LGKVVARSRKY-ESTAAQGQVAGDMHP |
Parental | NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP-KGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSAS |
NSTERAITIAGIPQSI.ECVKQICVVMLE....SPP.KG..IPYRPKPSSSPVIFAG.QDR.STGSD..S | |
Retrocopy | NSTERAITIAGIPQSITECVKQICVVMLE----SPP<KGLIIPYRPKPSSSPVIFAGNQDRCSTGSDGVS |
Parental | FPHTTSM |
FPHTT.. | |
Retrocopy | FPHTTTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .39 RPM | 293 .06 RPM |
SRP012922_cerebellum | 0 .00 RPM | 275 .08 RPM |
SRP012922_heart | 0 .00 RPM | 145 .48 RPM |
SRP012922_kidney | 0 .00 RPM | 473 .12 RPM |
SRP012922_liver | 0 .15 RPM | 279 .74 RPM |
SRP012922_lung | 0 .31 RPM | 371 .27 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 231 .76 RPM |
SRP012922_spleen | 0 .23 RPM | 350 .82 RPM |