RetrogeneDB ID: | retro_dnov_452 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4879:70149..70790(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBP1 | ||
Ensembl ID: | ENSDNOG00000008688 | ||
Aliases: | None | ||
Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
Percent Identity: | 89.5 % |
Parental protein coverage: | 58.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RIITLAGPTNAI-FKAF-AMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIR |
RII.LA.....I.FKAF.AMIIDKLEE.ISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI.EIR | |
Retrocopy | RIICLARRIDSI>FKAF>AMIIDKLEEYISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIEEIR |
Parental | ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFA |
ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE....SP.KGVTIPYRPKPSSS.VIFA | |
Retrocopy | ESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE----SPLKGVTIPYRPKPSSSSVIFA |
Parental | GGQDRYSTGSDSASFPHTT-SMCLN-DLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTG |
GGQDRYSTGSDSASFPHTT.SMCLN.DLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTG | |
Retrocopy | GGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTG |
Parental | FS-GIESSS |
FS.G...S. | |
Retrocopy | FSAGLDASA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 5 .83 RPM | 293 .06 RPM |
SRP012922_cerebellum | 4 .26 RPM | 275 .08 RPM |
SRP012922_heart | 1 .62 RPM | 145 .48 RPM |
SRP012922_kidney | 7 .39 RPM | 473 .12 RPM |
SRP012922_liver | 5 .11 RPM | 279 .74 RPM |
SRP012922_lung | 4 .73 RPM | 371 .27 RPM |
SRP012922_quadricep_muscle | 2 .60 RPM | 231 .76 RPM |
SRP012922_spleen | 5 .61 RPM | 350 .82 RPM |