Parental gene: | TCEA1, ENSDNOG00000013799 |
| Aliases: | None |
| Description: | transcription elongation factor A (SII), 1 [Source:HGNC Symbol;Acc:11612] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_6671:5874..68148(-) |
>ENSDNOG00000013799
ATGGAGGAGGAGGTGGTTCGCATTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACGCGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGACCA
TCAACTGATAAAGACTCTGAAAAGAAAAAGGAACCTACAATGACTTCACAGAATAGCCCTGAAGCACGAGAAGAAAGTAG
CTCCAGTGGCAATGTAAGCAGCAGAAAGGATGAGACAAATGCTCGAGATACTTATGTTTCGTCTTTTCCTCGGGCACCAA
GCACTTCTGATTCTGTACGATTAAAGTGTAGGGAGATGCTTGCTGCAGCTCTCCGAACAGGAGATGACTACATTGCTATT
GGAGCTGATGAGGAAGAATTAGGATCTCAAATTGAGGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATATAA
AAATAGAGTACGAAGTAGGATATCAAATCTTAAGGATGCAAAGAATCCAAACTTAAGGAAAAACGTACTGTGTGGGAATA
TTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCTCAAAGAGATGAGGAAAAACTTGACC
AAAGAAGCCATCAGAGAGCATCAAATGGCCAAAACAGGTGGAACCCAGACCGACTTCTTCACATGTGGCAAATGTAAAAA
GAAGAACTGTACTTACACGCAGGTACAAACACGTAGTGCTGATGAACCGATGACAACATTTGTCGTCTGTAATGAATGTG
GAAATCGATGGAAGGCATCC
ATGGAGGAGGAGGTGGTTCGCATTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACGCGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGACCA
TCAACTGATAAAGACTCTGAAAAGAAAAAGGAACCTACAATGACTTCACAGAATAGCCCTGAAGCACGAGAAGAAAGTAG
CTCCAGTGGCAATGTAAGCAGCAGAAAGGATGAGACAAATGCTCGAGATACTTATGTTTCGTCTTTTCCTCGGGCACCAA
GCACTTCTGATTCTGTACGATTAAAGTGTAGGGAGATGCTTGCTGCAGCTCTCCGAACAGGAGATGACTACATTGCTATT
GGAGCTGATGAGGAAGAATTAGGATCTCAAATTGAGGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATATAA
AAATAGAGTACGAAGTAGGATATCAAATCTTAAGGATGCAAAGAATCCAAACTTAAGGAAAAACGTACTGTGTGGGAATA
TTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCTCAAAGAGATGAGGAAAAACTTGACC
AAAGAAGCCATCAGAGAGCATCAAATGGCCAAAACAGGTGGAACCCAGACCGACTTCTTCACATGTGGCAAATGTAAAAA
GAAGAACTGTACTTACACGCAGGTACAAACACGTAGTGCTGATGAACCGATGACAACATTTGTCGTCTGTAATGAATGTG
GAAATCGATGGAAGGCATCC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 22 .17 RPM |
| SRP012922_cerebellum | 14 .98 RPM |
| SRP012922_heart | 7 .89 RPM |
| SRP012922_kidney | 17 .25 RPM |
| SRP012922_liver | 12 .69 RPM |
| SRP012922_lung | 29 .02 RPM |
| SRP012922_quadricep_muscle | 5 .54 RPM |
| SRP012922_spleen | 32 .96 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000001247 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014407 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000009220 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000187735 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000023652 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000016022 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000033813 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000981 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007474 | ortholog_one2many | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000018589 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000020251 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000022323 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000013661 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000021179 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000001030 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_839 | 70.80 | 73.33 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_952 | 73.86 | 50.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_1315 | 87.39 | 73.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_1853 | 73.76 | 65.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000013799 retrocopies