RetrogeneDB ID: | retro_ggor_2844 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 9:33607248..33607830(-) | ||
Located in intron of: | ENSGGOG00000014232 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEA1 | ||
Ensembl ID: | ENSGGOG00000023652 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.85 % |
Parental protein coverage: | 65.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPST |
.S..KS.KKLL....TEKD..EKKKEPA.T.QN.PEAREES.S.G..S.R..ETNA.DT.VSSF....ST | |
Retrocopy | QSVMKSGKKLLP---TEKDPEEKKKEPAVTLQNNPEAREESSSGGSASSREGETNALDTRVSSFIQERST |
Parental | SDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI-RNTDMKYKNRVRSRISNLKD-AKNP |
SDS..LKC.E.LAAAL.TG..Y.AIGA.EEELGSQIEEA.YQEI.RN.DMK.K.RV.SRISNLK..AKNP | |
Retrocopy | SDSLWLKCCEVLAAALQTGGGYTAIGAGEEELGSQIEEAVYQEI>RNIDMKCKSRV*SRISNLKE<AKNP |
Parental | NLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTC |
NLR.NV.C.NIPP.LFARM.A.EMASD.L.E..KNLTKEAIREH..AK.GGTQ..LFTC | |
Retrocopy | NLRENVPCENIPPVLFARMMAQEMASDGLREIWKNLTKEAIREH*VAKAGGTQSGLFTC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 35 .77 RPM |
SRP007412_cerebellum | 0 .28 RPM | 43 .14 RPM |
SRP007412_heart | 0 .16 RPM | 8 .35 RPM |
SRP007412_kidney | 0 .12 RPM | 54 .14 RPM |
SRP007412_liver | 0 .24 RPM | 58 .24 RPM |
SRP007412_testis | 0 .00 RPM | 87 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2884 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001247 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014407 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013799 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000009220 | 1 retrocopy | |
Homo sapiens | ENSG00000187735 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023652 | 3 retrocopies |
retro_ggor_2794, retro_ggor_2814, retro_ggor_2844 ,
|
Macaca mulatta | ENSMMUG00000016022 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033813 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000981 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007474 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000018589 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020251 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000022323 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013661 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021179 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001030 | 1 retrocopy |