Parental gene: | TCEA1, ENSG00000187735 |
| Aliases: | TCEA1, GTF2S, SII, TCEA, TF2S, TFIIS |
| Description: | transcription elongation factor A (SII), 1 [Source:HGNC Symbol;Acc:11612] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 8:54879111..54935089(-) |
>ENSG00000187735
ATGGAGGACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACGCGGCTGGAGCATTGGATTT
GCTAAAGGAGCTTAAGAATATTCCTATGACCCTGGAATTACTGCAGTCCACAAGAATCGGAATGTCAGTTAATGCTATTC
GCAAGCAGAGTACAGATGAGGAAGTTACATCTTTGGCAAAGTCTCTCATCAAATCCTGGAAAAAATTATTAGATGGGCCA
TCAACTGAGAAAGACCTTGACGAAAAGAAGAAAGAACCTGCAATTACATCGCAGAACAGCCCTGAGGCAAGAGAAGAAAG
TACTTCCAGCGGCAATGTAAGCAACAGAAAGGATGAGACAAATGCTCGAGATACTTATGTTTCATCCTTTCCTCGGGCAC
CAAGCACTTCTGATTCTGTGCGGTTGAAGTGTAGGGAGATGCTTGCTGCAGCTCTTCGAACAGGGGATGACTACATTGCA
ATTGGAGCTGATGAGGAAGAATTAGGATCTCAAATTGAAGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATA
CAAAAATAGAGTACGAAGTAGGATATCAAATCTTAAAGATGCAAAAAATCCAAATTTAAGGAAAAATGTCCTCTGTGGGA
ATATTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCTGAAAGAGATGCGGAAAAACTTG
ACCAAAGAAGCCATCAGAGAGCATCAGATGGCCAAGACTGGTGGGACCCAGACTGACTTGTTCACATGTGGCAAATGTAA
AAAGAAGAATTGCACTTACACACAGGTACAAACCCGTAGTGCTGATGAACCAATGACAACATTTGTTGTCTGTAATGAAT
GTGGAAATCGATGGAAGTTCTGTTGA
ATGGAGGACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACGCGGCTGGAGCATTGGATTT
GCTAAAGGAGCTTAAGAATATTCCTATGACCCTGGAATTACTGCAGTCCACAAGAATCGGAATGTCAGTTAATGCTATTC
GCAAGCAGAGTACAGATGAGGAAGTTACATCTTTGGCAAAGTCTCTCATCAAATCCTGGAAAAAATTATTAGATGGGCCA
TCAACTGAGAAAGACCTTGACGAAAAGAAGAAAGAACCTGCAATTACATCGCAGAACAGCCCTGAGGCAAGAGAAGAAAG
TACTTCCAGCGGCAATGTAAGCAACAGAAAGGATGAGACAAATGCTCGAGATACTTATGTTTCATCCTTTCCTCGGGCAC
CAAGCACTTCTGATTCTGTGCGGTTGAAGTGTAGGGAGATGCTTGCTGCAGCTCTTCGAACAGGGGATGACTACATTGCA
ATTGGAGCTGATGAGGAAGAATTAGGATCTCAAATTGAAGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATA
CAAAAATAGAGTACGAAGTAGGATATCAAATCTTAAAGATGCAAAAAATCCAAATTTAAGGAAAAATGTCCTCTGTGGGA
ATATTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCTGAAAGAGATGCGGAAAAACTTG
ACCAAAGAAGCCATCAGAGAGCATCAGATGGCCAAGACTGGTGGGACCCAGACTGACTTGTTCACATGTGGCAAATGTAA
AAAGAAGAATTGCACTTACACACAGGTACAAACCCGTAGTGCTGATGAACCAATGACAACATTTGTTGTCTGTAATGAAT
GTGGAAATCGATGGAAGTTCTGTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 41 .17 RPM |
| bodymap2_lung | 55 .47 RPM |
| bodymap2_breast | 80 .55 RPM |
| bodymap2_adipose | 81 .32 RPM |
| bodymap2_adrenal | 81 .04 RPM |
| bodymap2_skeletal_muscle | 64 .33 RPM |
| bodymap2_thyroid | 108 .83 RPM |
| bodymap2_prostate | 108 .44 RPM |
| bodymap2_colon | 101 .17 RPM |
| bodymap2_testis | 86 .48 RPM |
| bodymap2_brain | 60 .99 RPM |
| bodymap2_heart | 31 .18 RPM |
| bodymap2_white_blood_cells | 84 .36 RPM |
| bodymap2_lymph_node | 69 .71 RPM |
| bodymap2_ovary | 97 .04 RPM |
| bodymap2_kidney | 61 .61 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000001247 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014407 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000013799 | ortholog_one2one | 4 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000009220 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000023652 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000016022 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000033813 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000981 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007474 | ortholog_one2many | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000018589 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000020251 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000022323 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000013661 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000021179 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000001030 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_2634 | 99.00 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_4159 | 77.09 | 63.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_4200 | 76.26 | 65.45 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_4243 | 66.16 | 86.71 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000187735 retrocopies