RetrogeneDB ID: | retro_rnor_1089 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:15688722..15689625(+) | ||
Located in intron of: | ENSRNOG00000005883 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000005869 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tcea1 | ||
Ensembl ID: | ENSRNOG00000022323 | ||
Aliases: | None | ||
Description: | Transcription elongation factor A protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q4KLL0] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI |
MEDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI | |
Retrocopy | MEDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLI |
Parental | KSWKKLLDGPSTDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVSSFPRAPSTSDSV |
KSWKKLLDGPSTDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVSSFPRAPSTSDSV | |
Retrocopy | KSWKKLLDGPSTDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVSSFPRAPSTSDSV |
Parental | RLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNV |
RLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNV | |
Retrocopy | RLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNV |
Parental | LCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRS |
LCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRS | |
Retrocopy | LCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRS |
Parental | ADEPMTTFVVCNECGNRWKFC |
ADEPMTTFVVCNECGNRWKFC | |
Retrocopy | ADEPMTTFVVCNECGNRWKFC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .29 RPM | 25 .02 RPM |
SRP017611_kidney | 0 .49 RPM | 33 .98 RPM |
SRP017611_liver | 0 .61 RPM | 14 .66 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001247 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014407 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013799 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000009220 | 1 retrocopy | |
Homo sapiens | ENSG00000187735 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023652 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000016022 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033813 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000981 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007474 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000018589 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020251 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000022323 | 1 retrocopy |
retro_rnor_1089 ,
|
Sarcophilus harrisii | ENSSHAG00000013661 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021179 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001030 | 1 retrocopy |