Parental gene:

MMU.2381, ENSMMUG00000016022

Aliases:None
Description:transcription elongation factor A protein 1 [Source:RefSeq peptide;Acc:NP_001247637]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:8:56563249..56619291(-)


>ENSMMUG00000016022
ATGGAGGACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACGCGGCTGGAGCATTGGATTT
GCTAAAGGAGCTTAAGAATATTCCTATGACCCTGGAATTATTGCAGTCCACAAGAATCGGCATGTCAGTTAATGCTATTC
GCAAGCAGAGTACAGACGAAGAAGTTACATCTTTGGCAAAGTCTCTCATCAAATCCTGGAAAAAATTATTAGATGGGCCA
TCAACTGAGAAAGACCTTGACGAAAAGAAAAAAGAACCTGCAATTACATCACAGAACAGCCCTGAAGCAAGAGAAGAAAG
TACTTCCAGCGGCAATGTAAGCAACAGAAAGGATGAGACAAATGCTCGAGATACTTACGTTTCATCCTTTCCTCGGGCAC
CAAGCACTTCTGATTCTGTGCGGTTGAAGTGTAGGGAGATGCTTGCGGCAGCTCTTCGAACAGGGGATGACTACATTGCA
ATTGGAGCTGATGAGGAAGAATTAGGATCTCAAATTGAAGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATA
CAAAAATAGAGTACGAAGTAGGATATCAAATCTTAAAGATGCAAAAAATCCAAATTTAAGGAAAAATGTCCTCTGTGGGA
ATATTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCTGAAAGAGATGCGGAAAAACTTG
ACCAAAGAAGCCATCAGAGAGCATCAGATGGCCAAGACTGGTGGGACCCAGACTGACTTGTTCACATGTGGCAAATGTAA
AAAGAAGAATTGCACTTACACACAGGTACAAACCCGTAGTGCTGATGAACCAATGACAACATTTGTTGTCTGTAATGAAT
GTGGAAATCGATGGAAGATATGC

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 19 .28 RPM
SRP007412_brain 26 .56 RPM
SRP007412_cerebellum 24 .60 RPM
SRP007412_heart 15 .43 RPM
SRP007412_kidney 19 .95 RPM
SRP007412_liver 17 .18 RPM
SRP007412_testis 26 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001247 ortholog_one2one 1 retrogene
retro_chof_458,
Callithrix jacchus ENSCJAG00000014407 ortholog_one2one 1 retrogene
retro_cjac_2095,
Dasypus novemcinctus ENSDNOG00000013799 ortholog_one2one 4 retrogenes
retro_dnov_1315, retro_dnov_1853, retro_dnov_839, retro_dnov_952,
Erinaceus europaeus ENSEEUG00000009220 ortholog_one2one 1 retrogene
retro_eeur_73,
Homo sapiens ENSG00000187735 ortholog_one2one 4 retrogenes
retro_hsap_2634, retro_hsap_4159, retro_hsap_4200, retro_hsap_4243,
Gorilla gorilla ENSGGOG00000023652 ortholog_one2one 3 retrogenes
retro_ggor_2794, retro_ggor_2814, retro_ggor_2844,
Mus musculus ENSMUSG00000033813 ortholog_one2one 2 retrogenes
retro_mmus_1369, retro_mmus_3559,
Nomascus leucogenys ENSNLEG00000000981 ortholog_one2one 3 retrogenes
retro_nleu_1028, retro_nleu_1374, retro_nleu_1384,
Oryctolagus cuniculus ENSOCUG00000007474 ortholog_one2many 3 retrogenes
retro_ocun_1382, retro_ocun_401, retro_ocun_852,
Pongo abelii ENSPPYG00000018589 ortholog_one2one 3 retrogenes
retro_pabe_3395, retro_pabe_3436, retro_pabe_3455,
Pan troglodytes ENSPTRG00000020251 ortholog_one2one 2 retrogenes
retro_ptro_2851, retro_ptro_2884,
Rattus norvegicus ENSRNOG00000022323 ortholog_one2many 1 retrogene
retro_rnor_1089,
Sarcophilus harrisii ENSSHAG00000013661 ortholog_one2many 1 retrogene
retro_shar_50,
Ictidomys tridecemlineatus ENSSTOG00000021179 ortholog_one2one 1 retrogene
retro_itri_1745,
Tarsius syrichta ENSTSYG00000001030 ortholog_one2one 1 retrogene
retro_tsyr_1624,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1146 63.50 86.71
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Download FASTA sequences of all ENSMMUG00000016022 retrocopies