RetrogeneDB ID: | retro_ocun_401 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:148234869..148235529(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027784 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000007474 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.64 % |
Parental protein coverage: | 84.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | STEKDPEEKKKEPAITSQNSPEAREESSSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAA |
S..K....KKKEPAITSQNSPEAREE..SSGNVSNRKDETNA.DTYVSSFP.APSTSDSV.LKCREMLAA | |
Retrocopy | SWKKLLDGKKKEPAITSQNSPEAREENISSGNVSNRKDETNAQDTYVSSFPQAPSTSDSVWLKCREMLAA |
Parental | ALRTGDDYVAIGADEEELGSQIDLVPIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDL |
ALRTGDDY.AIGADEEELGSQI..V.IYQEIRNTDMKYKNRV.SRISNLKDA.N.NLRKNVLCGNIPPDL | |
Retrocopy | ALRTGDDYIAIGADEEELGSQIEEV-IYQEIRNTDMKYKNRVQSRISNLKDANNSNLRKNVLCGNIPPDL |
Parental | FARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFV |
FARMTAEEMASDELKEMRKNLTKEAIREHQMAKT.GTQTDLFTC.KC.KKNCTYTQVQTRSADEPMTTFV | |
Retrocopy | FARMTAEEMASDELKEMRKNLTKEAIREHQMAKTDGTQTDLFTCDKC-KKNCTYTQVQTRSADEPMTTFV |
Parental | VCNECGNRWKVC |
VC.ECGNRWK.C | |
Retrocopy | VCDECGNRWKFC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .40 RPM |
SRP017611_kidney | 0 .10 RPM | 6 .69 RPM |
SRP017611_liver | 0 .08 RPM | 3 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001247 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014407 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013799 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000009220 | 1 retrocopy | |
Homo sapiens | ENSG00000187735 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023652 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000016022 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033813 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000981 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007474 | 3 retrocopies |
retro_ocun_1382, retro_ocun_401 , retro_ocun_852,
|
Pongo abelii | ENSPPYG00000018589 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000020251 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000022323 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013661 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021179 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001030 | 1 retrocopy |