RetrogeneDB ID: | retro_pabe_3395 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9:28672941..28673556(+) | ||
Located in intron of: | ENSPPYG00000019142 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TCEA1 | ||
Ensembl ID: | ENSPPYG00000018589 | ||
Aliases: | None | ||
Description: | transcription elongation factor A (SII), 1 [Source:HGNC Symbol;Acc:11612] |
Percent Identity: | 63.98 % |
Parental protein coverage: | 69.44 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIK |
ED.VV..AK.MDKMVQK.N.AGALDL.KELKNIP.T.ELLQ..............S.......L..S..K | |
Retrocopy | EDKVVPMAK*MDKMVQK-NTAGALDLPKELKNIPTTMELLQPPEESEYQLMLMASSIKMKKLHL*QSVMK |
Parental | SWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVR |
SWKKLL...S.EKD..EKKKEPA.T.QN.PEAREES.S.GN.S.R..ETN..DT.VSSF....STSDS.. | |
Retrocopy | SWKKLL---SIEKDPEEKKKEPAVTLQNNPEAREESSSGGNASSREGETNVLDTRVSSFIQERSTSDSLW |
Parental | LKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI-RNTDMKYKNRVRSRISNLKD-AKNPNLRKN |
LKC.E.LAAAL.TGD.Y.A.GA.EEELGSQIEEA.YQE..RN.D.K.K.RV.SRISNLK..AKNPNLR.N | |
Retrocopy | LKCWEVLAAALQTGDGYTAVGAGEEELGSQIEEAVYQEV>RNIDTKCKSRV*SRISNLKE<AKNPNLREN |
Parental | V |
V | |
Retrocopy | V |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .38 RPM | 27 .31 RPM |
SRP007412_cerebellum | 3 .04 RPM | 40 .86 RPM |
SRP007412_heart | 0 .15 RPM | 20 .95 RPM |
SRP007412_kidney | 0 .46 RPM | 29 .47 RPM |
SRP007412_liver | 0 .49 RPM | 32 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4243 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001247 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014407 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013799 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000009220 | 1 retrocopy | |
Homo sapiens | ENSG00000187735 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000023652 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000016022 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033813 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000981 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007474 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000018589 | 3 retrocopies |
retro_pabe_3395 , retro_pabe_3436, retro_pabe_3455,
|
Pan troglodytes | ENSPTRG00000020251 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000022323 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013661 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021179 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001030 | 1 retrocopy |