Parental gene:

ZDHHC20, ENSECAG00000016465

Aliases:None
Description:zinc finger, DHHC-type containing 20 [Source:HGNC Symbol;Acc:20749]
Organism:Horse (Equus caballus)
Coordinates:17:2084929..2239203(-)


>ENSECAG00000016465
ATTGTGAACCTGTGCATCTTTACCGTGTTATTTAATAGATGTTCAGGAAAGGCCGTTGTTTACCTTGTGGGTTTCCATCT
GTTCTTTGTTATGTTTGTATGGTCCTATTGGATGACAGTTTTCACATCTCCCGCTTCCCCCTCCAAAGAGTTCTACTTGT
CCAGTTCTGACAAGGAACGTTATGAAAAGGAATTCAACCAAGAAAGACAACAAGAAATTTTGAGAAGAACGGCAAGGGAC
TTACCTATCTCCACCCTGTCAGCTGCAAGGACCATCAGATATTGTGAAAGATGTCAGTTGATTAAACCTGACCGTGCGCA
TCACTGCTCAGCATGTGACATATGTGTTCTTAAGATGGATCATCACTGTCCTTGGGTGAATAACTGTGTGGGATTTTCTA
ATTATAAATTCTTCCTGCTGTTTTTATTGTATTCCCTATTATATTGCCTTTTCGTGGCTACAACAGTTTTACAGTGCTTT
ATAAAATTTTGGACGAATGAACTCTCAGCTACACGTGCAAAATTCCACGTGCTTTTTCTTTTCTTTGTGTCTACAATGTT
CTTCATCAGCGTCCTGTCGCTGTTCAGCTACCACTGCTGGCTAGTTGGGAAAAATAGAACAACGATAGAATCATTCCGTG
CACCCACATTTTCCTATGGACCTGATGGAAATGGTTTCTCTCTTGGATGCAGTAAAAATTGGAGACAAGTCTTTGGTGAT
GAAAAGAAATATTGGCTACTTCCAATATTTTCAAGTTTGGGTGATGGTTGCAGTTTCCCAACTCGCCTGGTGGGGATGGA
TCCAGAGCAAGCTTCTGTTTCAAACCAAAACGAATATGCCAGAAGTATTGGCTCAAATCAACCCTTTCCTGTCAAACCAC
TTAGTGAATCAAAAAACCGGTTATTGGACAGTGAGTCTCAGTGGCTAGAGAATGGATCTGAAGAAAGCACCGTCAGATCA
GGGACAAATAACCATGTTACAGTGGCAATAGAAAATTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 10 .82 RPM
SRP021940_embryo 10 .31 RPM
SRP021940_cerebellum 5 .76 RPM
SRP021940_testis 22 .38 RPM
SRP021940_placental_villous 10 .15 RPM
SRP021940_articular_cartilage 8 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012155 ortholog_one2one 2 retrogenes
retro_chof_1627, retro_chof_2008,
Cavia porcellus ENSCPOG00000011489 ortholog_one2one 1 retrogene
retro_cpor_303,
Homo sapiens ENSG00000180776 ortholog_one2one 1 retrogene
retro_hsap_1211,
Gorilla gorilla ENSGGOG00000000435 ortholog_one2one 2 retrogenes
retro_ggor_1003, retro_ggor_943,
Macaca mulatta ENSMMUG00000007373 ortholog_one2one 1 retrogene
retro_mmul_1288,
Pongo abelii ENSPPYG00000005201 ortholog_one2one 1 retrogene
retro_pabe_1081,
Pan troglodytes ENSPTRG00000005695 ortholog_one2one 1 retrogene
retro_ptro_829,
Tarsius syrichta ENSTSYG00000003013 ortholog_one2one 1 retrogene
retro_tsyr_998,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_683 87.61 98.80
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Download FASTA sequences of all ENSECAG00000016465 retrocopies