RetrogeneDB ID: | retro_hsap_1211 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:69559189..69560199(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232380 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZDHHC20 | ||
Ensembl ID: | ENSG00000180776 | ||
Aliases: | None | ||
Description: | zinc finger, DHHC-type containing 20 [Source:HGNC Symbol;Acc:20749] |
Percent Identity: | 91.47 % |
Parental protein coverage: | 95.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAPWTLWRCCQRVVGWVPVLFITFVVVWSYYAYVVELCVFTIFGNEENGKTVVYLVAFHLFFV-MFVWSY |
MAPWTL.RCC..V.GWVPVL.ITFVV.WSYYAYVVELCVFTIFGNEENGKTV.YLVAF.L....MFVWSY | |
Retrocopy | MAPWTLSRCCHCVMGWVPVLLITFVVIWSYYAYVVELCVFTIFGNEENGKTVFYLVAFPLXXX<MFVWSY |
Parental | WMTIFTSPASPSKEFYLSNSEKERYEKEFSQERQQEILRRAARALPIYTTSASKTIRYCEKCQLIKPDRA |
WMTIFTSPASPSKEFYLSNSEKERY.KEFSQERQQEILRRAARALPI.TT..SKTIRYCEKCQLIKPDRA | |
Retrocopy | WMTIFTSPASPSKEFYLSNSEKERYGKEFSQERQQEILRRAARALPICTTPVSKTIRYCEKCQLIKPDRA |
Parental | HHCSACDSCILKMDHHCPWVNNCVGFSNYKFFLLFLLYSLLYCLFVAA-TVLEYFIKFWTNELTDTRAKF |
HHCS.CDSCILKMDHHCPWVNNCVGFSNYKFFLLFLLYSLLYCLFVAA.TVLEYFIKFWTNELTDTRAKF | |
Retrocopy | HHCSTCDSCILKMDHHCPWVNNCVGFSNYKFFLLFLLYSLLYCLFVAA>TVLEYFIKFWTNELTDTRAKF |
Parental | HVLFLFFVSAMFFISVLSLFSYHCWLVGKNRTTIESFRAPTFSYGPDGNGFSLGCSKNWRQVFGDEKKYW |
HVLFLFFVSAMFFISVLSLFSYHCWLVGKNRTTIESF.APTFS.GPDGNGFSL...KNWRQVFGDEKKYW | |
Retrocopy | HVLFLFFVSAMFFISVLSLFSYHCWLVGKNRTTIESFSAPTFSCGPDGNGFSLRYNKNWRQVFGDEKKYW |
Parental | LLPIFSSLGDGCS-FPTRLVGMDPEQASVTNQNEYARSGSNQPFPIKPLSESKNRLLDSE |
LL.IFSSLGDGCS.FPTRLVGM.PEQASVTNQNEYARSGSNQPFP.KPLSESK..LLDSE | |
Retrocopy | LLSIFSSLGDGCS<FPTRLVGMGPEQASVTNQNEYARSGSNQPFPFKPLSESKKLLLDSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .20 RPM | 16 .36 RPM |
bodymap2_adrenal | 0 .04 RPM | 15 .27 RPM |
bodymap2_brain | 0 .21 RPM | 34 .34 RPM |
bodymap2_breast | 0 .02 RPM | 15 .02 RPM |
bodymap2_colon | 0 .12 RPM | 17 .89 RPM |
bodymap2_heart | 0 .00 RPM | 6 .94 RPM |
bodymap2_kidney | 0 .00 RPM | 6 .78 RPM |
bodymap2_liver | 0 .06 RPM | 4 .41 RPM |
bodymap2_lung | 0 .00 RPM | 14 .59 RPM |
bodymap2_lymph_node | 0 .27 RPM | 19 .64 RPM |
bodymap2_ovary | 0 .06 RPM | 17 .04 RPM |
bodymap2_prostate | 0 .05 RPM | 22 .85 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 4 .69 RPM |
bodymap2_testis | 0 .06 RPM | 34 .14 RPM |
bodymap2_thyroid | 0 .08 RPM | 14 .24 RPM |
bodymap2_white_blood_cells | 0 .24 RPM | 61 .86 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_829 |
Gorilla gorilla | retro_ggor_943 |
Macaca mulatta | retro_mmul_1288 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012155 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011489 | 1 retrocopy | |
Equus caballus | ENSECAG00000016465 | 1 retrocopy | |
Homo sapiens | ENSG00000163812 | 1 retrocopy | |
Homo sapiens | ENSG00000180776 | 1 retrocopy |
retro_hsap_1211 ,
|
Gorilla gorilla | ENSGGOG00000000435 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007373 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005201 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005695 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003013 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .11 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .20 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .09 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .15 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .16 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .09 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .04 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .09 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .09 RPM |
TSI_NA20786 | 0 .08 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .07 RPM |
YRI_NA18907 | 0 .14 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .08 RPM |
YRI_NA19099 | 0 .08 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .10 RPM |
YRI_NA19213 | 0 .14 RPM |
YRI_NA19214 | 0 .12 RPM |
YRI_NA19223 | 0 .00 RPM |