Parental gene: | ZDHHC20, ENSPTRG00000005695 |
| Aliases: | None |
| Description: | zinc finger, DHHC-type containing 20 [Source:HGNC Symbol;Acc:20749] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 13:20893622..20973958(-) |
>ENSPTRG00000005695
ATGGCGCCCTGGACGCTGTGGCGCTGCTGCCAGCGCGTCGTGGGCTGGGTGCCGGTGCTCTTCATCACCTTCGTGGTCGT
CTGGTCCTACTACGCGTACGTGGTGGAGCTTTGCGTGTTTACTATTTTTGGAAATGAAGAAAATGGAAAGACCGTTGTTT
ACCTTGTGGCTTTCCATCTGTTCTTTGTTATGTTTGTATGGTCCTATTGGATGACAATTTTCACATCTCCCGCTTCCCCC
TCCAAAGAGTTCTACTTGTCCAATTCTGAAAAGGAACGTTATGAAAAAGAATTCAGCCAAGAAAGACAACAAGAAATTTT
GAGAAGAGCAGCAAGAGCTTTACCTATCTATACCACATCAGCTTCAAAAACTATCAGATATTGTGAAAAATGTCAGCTGA
TTAAACCTGATCGGGCACATCACTGCTCAGCATGTGACTCATGTATTCTTAAGATGGATCATCACTGTCCTTGGGTGAAT
AACTGTGTGGGATTTTCTAATTACAAATTCTTCCTGCTGTTTTTATTGTATTCCCTATTATATTGCCTTTTCGTGGCTGC
AACAGTTTTAGAGTACTTTATAAAATTTTGGACGAATGAACTGACAGATACACGTGCAAAATTCCACGTACTTTTTCTTT
TCTTTGTGTCTGCAATGTTCTTCATCAGCGTCCTCTCACTTTTCAGCTACCACTGCTGGCTAGTTGGAAAAAATAGAACA
ACAATAGAATCATTCCGCGCACCCACATTTTCATACGGACCTGATGGAAATGGTTTCTCTCTTGGATGCAGTAAAAATTG
GAGACAAGTCTTTGGTGATGAAAAGAAATATTGGCTACTTCCAATATTTTCAAGCTTGGGTGATGGTTGCAGTTTTCCAA
CTCGCCTTGTGGGGATGGATCCAGAACAAGCTTCTGTTACAAACCAGAATGAGTATGCCAGAAGTAGTGGCTCAAATCAG
CCTTTTCCTATCAAACCACTTAGTGAATCAAAAAACCGCTTGTTGGACAGTGAATCTCAGTGGCTGGAGAATGGAGCTGA
AGAAGGCATCATCAAATCAGGGACAAATAACCATGTAACAATGGCAATAGAAAATTGA
ATGGCGCCCTGGACGCTGTGGCGCTGCTGCCAGCGCGTCGTGGGCTGGGTGCCGGTGCTCTTCATCACCTTCGTGGTCGT
CTGGTCCTACTACGCGTACGTGGTGGAGCTTTGCGTGTTTACTATTTTTGGAAATGAAGAAAATGGAAAGACCGTTGTTT
ACCTTGTGGCTTTCCATCTGTTCTTTGTTATGTTTGTATGGTCCTATTGGATGACAATTTTCACATCTCCCGCTTCCCCC
TCCAAAGAGTTCTACTTGTCCAATTCTGAAAAGGAACGTTATGAAAAAGAATTCAGCCAAGAAAGACAACAAGAAATTTT
GAGAAGAGCAGCAAGAGCTTTACCTATCTATACCACATCAGCTTCAAAAACTATCAGATATTGTGAAAAATGTCAGCTGA
TTAAACCTGATCGGGCACATCACTGCTCAGCATGTGACTCATGTATTCTTAAGATGGATCATCACTGTCCTTGGGTGAAT
AACTGTGTGGGATTTTCTAATTACAAATTCTTCCTGCTGTTTTTATTGTATTCCCTATTATATTGCCTTTTCGTGGCTGC
AACAGTTTTAGAGTACTTTATAAAATTTTGGACGAATGAACTGACAGATACACGTGCAAAATTCCACGTACTTTTTCTTT
TCTTTGTGTCTGCAATGTTCTTCATCAGCGTCCTCTCACTTTTCAGCTACCACTGCTGGCTAGTTGGAAAAAATAGAACA
ACAATAGAATCATTCCGCGCACCCACATTTTCATACGGACCTGATGGAAATGGTTTCTCTCTTGGATGCAGTAAAAATTG
GAGACAAGTCTTTGGTGATGAAAAGAAATATTGGCTACTTCCAATATTTTCAAGCTTGGGTGATGGTTGCAGTTTTCCAA
CTCGCCTTGTGGGGATGGATCCAGAACAAGCTTCTGTTACAAACCAGAATGAGTATGCCAGAAGTAGTGGCTCAAATCAG
CCTTTTCCTATCAAACCACTTAGTGAATCAAAAAACCGCTTGTTGGACAGTGAATCTCAGTGGCTGGAGAATGGAGCTGA
AGAAGGCATCATCAAATCAGGGACAAATAACCATGTAACAATGGCAATAGAAAATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 7 .90 RPM |
| SRP007412_cerebellum | 12 .15 RPM |
| SRP007412_heart | 3 .70 RPM |
| SRP007412_kidney | 4 .13 RPM |
| SRP007412_liver | 2 .85 RPM |
| SRP007412_testis | 67 .45 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000012155 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000011489 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000016465 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000180776 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000000435 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000007373 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005201 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014829 | other_paralog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000003013 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_829 | 91.28 | 59.18 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000005695 retrocopies