Parental gene:

ZDHHC20, ENSG00000180776

Aliases:None
Description:zinc finger, DHHC-type containing 20 [Source:HGNC Symbol;Acc:20749]
Organism:Human (Homo sapiens)
Coordinates:13:21950262..22033509(-)


>ENSG00000180776
ATGGCGCCCTGGACGCTGTGGCGCTGCTGCCAGCGCGTCGTGGGCTGGGTGCCGGTGCTCTTCATCACCTTCGTGGTCGT
CTGGTCCTACTACGCGTACGTGGTGGAGCTCTGCGTGTTTACTATTTTTGGAAATGAAGAAAATGGAAAGACCGTTGTTT
ACCTTGTGGCTTTCCATCTGTTCTTTGTTATGTTTGTATGGTCCTATTGGATGACAATTTTCACATCTCCCGCTTCCCCC
TCCAAAGAGTTCTACTTGTCCAATTCTGAAAAGGAACGTTATGAAAAAGAATTCAGCCAAGAAAGACAACAAGAAATTTT
GAGAAGAGCAGCAAGAGCTTTACCTATCTATACCACATCAGCTTCAAAAACTATCAGATATTGTGAAAAATGTCAGCTGA
TTAAACCTGATCGGGCGCATCACTGCTCAGCCTGTGACTCATGTATTCTTAAGATGGATCATCACTGTCCTTGGGTGAAT
AACTGTGTGGGATTTTCTAATTACAAATTCTTCCTGCTGTTTTTATTGTATTCCCTATTATATTGCCTTTTCGTGGCTGC
AACAGTTTTAGAGTACTTTATAAAATTTTGGACGAATGAACTGACAGATACACGTGCAAAATTCCACGTACTTTTTCTTT
TCTTTGTGTCTGCAATGTTCTTCATCAGCGTCCTCTCACTTTTCAGCTACCACTGCTGGCTAGTTGGAAAAAATAGAACA
ACAATAGAATCATTCCGCGCACCCACGTTTTCATACGGACCTGATGGAAATGGTTTCTCTCTTGGATGCAGTAAAAATTG
GAGACAAGTCTTTGGTGATGAAAAGAAATATTGGCTACTTCCAATATTTTCAAGCTTGGGTGATGGTTGCAGTTTTCCAA
CTCGCCTTGTGGGGATGGATCCAGAACAAGCTTCTGTTACAAACCAGAATGAGTATGCCAGAAGTGGCTCAAATCAACCT
TTTCCTATCAAACCACTTAGTGAATCAAAAAACCGCTTGTTGGACAGTGAATCTCAGTGGCTGGAGAATGGAGCTGAAGA
AGGCATCGTCAAATCAGGTGTATGA

Library Parental gene expression (RPM)
bodymap2_liver 4 .41 RPM
bodymap2_lung 14 .59 RPM
bodymap2_breast 15 .02 RPM
bodymap2_adipose 16 .36 RPM
bodymap2_adrenal 15 .27 RPM
bodymap2_skeletal_muscle 4 .69 RPM
bodymap2_thyroid 14 .24 RPM
bodymap2_prostate 22 .85 RPM
bodymap2_colon 17 .89 RPM
bodymap2_testis 34 .14 RPM
bodymap2_brain 34 .34 RPM
bodymap2_heart 6 .94 RPM
bodymap2_white_blood_cells 61 .86 RPM
bodymap2_lymph_node 19 .64 RPM
bodymap2_ovary 17 .04 RPM
bodymap2_kidney 6 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012155 ortholog_one2one 2 retrogenes
retro_chof_1627, retro_chof_2008,
Cavia porcellus ENSCPOG00000011489 ortholog_one2one 1 retrogene
retro_cpor_303,
Equus caballus ENSECAG00000016465 ortholog_one2one 1 retrogene
retro_ecab_683,
Homo sapiens ENSG00000163812 other_paralog 1 retrogene
retro_hsap_3221,
Gorilla gorilla ENSGGOG00000000435 ortholog_one2one 2 retrogenes
retro_ggor_1003, retro_ggor_943,
Macaca mulatta ENSMMUG00000007373 ortholog_one2one 1 retrogene
retro_mmul_1288,
Pongo abelii ENSPPYG00000005201 ortholog_one2one 1 retrogene
retro_pabe_1081,
Pan troglodytes ENSPTRG00000005695 ortholog_one2one 1 retrogene
retro_ptro_829,
Tarsius syrichta ENSTSYG00000003013 ortholog_one2one 1 retrogene
retro_tsyr_998,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1211 91.47 95.20
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Download FASTA sequences of all ENSG00000180776 retrocopies