Parental gene:

RPL31, ENSECAG00000024079

Aliases:None
Description:ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]
Organism:Horse (Equus caballus)
Coordinates:15:8446815..8452924(-)


>ENSECAG00000024079
ATGGCTCCCGCTAAGAAGGGTGGCGAGAAGAAGAAGGGCCGCTCTGCCATCAACGAGGTGGTGACCAGAGAATACACCAT
CAACATCCACAAGCGCATCCATGGCGTGGGCTTCAAGAAACGTGCCCCTCGGGCACTCAAAGAGATCCGGAAATTTGCCA
TGAAGGAGATGGGAACTCCAGATGTGCGAATTGACACCAGGCTCAACAAAGCTGTCTGGGCCAAAGGAATAAGGAATGTC
CCATACCGTATCCGTGTGCGGTTGTCCAGAAAACGTAATGAGGATGAAGATTCACCAAACAAACTCTATACGTTGGTTAC
CTACGTACCTGTCACCACTTTCAAAAATCTACAGACAGTCAACGTGGATGAGAACTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 274 .11 RPM
SRP021940_embryo 312 .70 RPM
SRP021940_cerebellum 157 .98 RPM
SRP021940_testis 148 .80 RPM
SRP021940_placental_villous 177 .00 RPM
SRP021940_articular_cartilage 327 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000021031 ortholog_one2one 5 retrogenes
retro_cpor_1184, retro_cpor_170, retro_cpor_190, retro_cpor_341, retro_cpor_366,
Latimeria chalumnae ENSLACG00000013603 ortholog_one2one 1 retrogene
retro_lcha_94,
Loxodonta africana ENSLAFG00000027873 ortholog_one2one 12 retrogenes
retro_lafr_118, retro_lafr_187, retro_lafr_20, retro_lafr_245, retro_lafr_307, retro_lafr_56, retro_lafr_663, retro_lafr_703, retro_lafr_710, retro_lafr_778, retro_lafr_885, retro_lafr_926,
Macropus eugenii ENSMEUG00000000963 ortholog_one2one 8 retrogenes
retro_meug_1083, retro_meug_1433, retro_meug_1731, retro_meug_1741, retro_meug_198, retro_meug_418, retro_meug_588, retro_meug_649,
Myotis lucifugus ENSMLUG00000002507 possible_ortholog 21 retrogenes
retro_mluc_1072, retro_mluc_1135, retro_mluc_1239, retro_mluc_1301, retro_mluc_1406, retro_mluc_1470, retro_mluc_1666, retro_mluc_1678, retro_mluc_1896, retro_mluc_1913, retro_mluc_2028, retro_mluc_2124, retro_mluc_2126, retro_mluc_269, retro_mluc_303, retro_mluc_463, retro_mluc_767, retro_mluc_782, retro_mluc_914, retro_mluc_922, retro_mluc_997,
Mustela putorius furo ENSMPUG00000012197 ortholog_one2one 2 retrogenes
retro_mputfur_50, retro_mputfur_71,
Otolemur garnettii ENSOGAG00000014494 ortholog_one2many 10 retrogenes
retro_ogar_103, retro_ogar_143, retro_ogar_150, retro_ogar_178, retro_ogar_181, retro_ogar_186, retro_ogar_262, retro_ogar_271, retro_ogar_29, retro_ogar_3,
Pongo abelii ENSPPYG00000025870 possible_ortholog 4 retrogenes
retro_pabe_106, retro_pabe_1635, retro_pabe_168, retro_pabe_895,
Sus scrofa ENSSSCG00000008170 possible_ortholog 4 retrogenes
retro_sscr_1072, retro_sscr_1073, retro_sscr_128, retro_sscr_263,
Sus scrofa ENSSSCG00000025180 possible_ortholog 6 retrogenes
retro_sscr_20, retro_sscr_34, retro_sscr_469, retro_sscr_501, retro_sscr_713, retro_sscr_81,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_163 62.00 80.00
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2. retro_ecab_206 55.04 99.19
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3. retro_ecab_259 86.07 96.00
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4. retro_ecab_332 59.38 100.00
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5. retro_ecab_397 74.14 92.74
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6. retro_ecab_414 67.46 99.20
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7. retro_ecab_448 71.15 82.40
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8. retro_ecab_451 71.31 96.00
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9. retro_ecab_499 72.28 80.80
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10. retro_ecab_812 67.20 98.40
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11. retro_ecab_972 64.71 91.13
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12. retro_ecab_1034 70.69 91.20
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13. retro_ecab_1102 80.95 100.00
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Download FASTA sequences of all ENSECAG00000024079 retrocopies