Parental gene:

MKI67IP, ENSEEUG00000008535

Aliases:None
Description:MKI67 (FHA domain) interacting nucleolar phosphoprotein [Source:HGNC Symbol;Acc:17838]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_5481:170..12748(-)


>ENSEEUG00000008535
ATGGCGGTGTTTGCTGGCCCAGCTAAACCGCTCCTGTCGCTGAGCCCGAAGGACGATACCAGATTTCAGAAGGAGGTGGT
GCAGGTTCGCCGGCGGGCGGTCCAGCAACAGAAGAAAGAAAAACCTTCTTCCGGAGTGATCTATGTGGGACACTTACCTT
CAACAATTTATGAATCCCAGATCAAGTCCTATTTCTCCCAGTTTGGCGCTGTTAAAAGATTCAGGCTATCCAGAAGTAAA
AGGACTGGAAATAGCAAAGGTTATGCCTTTGTGGAGTTTGAATCTGAAGATGTTGCCAAAATTGTGGCGGAAACAATGAA
CAACTACCTTTTTGGTGAAAGGCTTTTAAAATGTCATTTTGTACCGCATGAAAAAGTACACGAAGAGCTTTTTAAAAATT
GCTGTGTTCCGTTCAGAAAACCATCGTTCCCTGCAGTGAAACGGTACAACCAGACCCGGTCACTTCTTCAAAAGCTACAG
ATGGAGAGGAGATTTCAAAAGAAAGAAAACCTACTCAGGAAGAAACTGGCTAAGAAAGGAATTGATTATGAGTTTTCTCC
ATTGATTTTACATAAGAAGGGGAAAAAAAGTGCTTCATCTGCTGATCCAGACATGTCTACAAAGAGTCAGGTTTTACCAA
AGAAAAAGAAGAAAAAGATCTCAGTTAGTTCTGACACTCCTGAGAAGACTGTGGATAGCCAG

Library Parental gene expression (RPM)
SRP017611_brain 3 .06 RPM
SRP017611_kidney 6 .75 RPM
SRP017611_liver 4 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019387 ortholog_one2one 1 retrogene
retro_btau_1516,
Choloepus hoffmanni ENSCHOG00000002227 ortholog_one2one 5 retrogenes
retro_chof_1061, retro_chof_1449, retro_chof_1735, retro_chof_236, retro_chof_2480,
Callithrix jacchus ENSCJAG00000013386 ortholog_one2one 1 retrogene
retro_cjac_3076,
Dasypus novemcinctus ENSDNOG00000005017 ortholog_one2one 2 retrogenes
retro_dnov_1869, retro_dnov_2487,
Homo sapiens ENSG00000155438 ortholog_one2one 5 retrogenes
retro_hsap_1077, retro_hsap_1596, retro_hsap_1609, retro_hsap_1611, retro_hsap_553,
Gorilla gorilla ENSGGOG00000023498 ortholog_one2many 4 retrogenes
retro_ggor_1213, retro_ggor_1923, retro_ggor_2225, retro_ggor_850,
Loxodonta africana ENSLAFG00000030731 ortholog_one2one 1 retrogene
retro_lafr_500,
Microcebus murinus ENSMICG00000015787 ortholog_one2one 1 retrogene
retro_mmur_990,
Myotis lucifugus ENSMLUG00000006481 ortholog_one2one 2 retrogenes
retro_mluc_1217, retro_mluc_1369,
Macaca mulatta ENSMMUG00000020928 ortholog_one2many 11 retrogenes
retro_mmul_1444, retro_mmul_1544, retro_mmul_2149, retro_mmul_2151, retro_mmul_2225, retro_mmul_2226, retro_mmul_2389, retro_mmul_690, retro_mmul_696, retro_mmul_697, retro_mmul_752,
Monodelphis domestica ENSMODG00000000152 ortholog_one2many 2 retrogenes
retro_mdom_1271, retro_mdom_737,
Nomascus leucogenys ENSNLEG00000001163 ortholog_one2one 4 retrogenes
retro_nleu_1756, retro_nleu_1942, retro_nleu_2022, retro_nleu_669,
Pongo abelii ENSPPYG00000025875 ortholog_one2many 2 retrogenes
retro_pabe_2248, retro_pabe_510,
Pan troglodytes ENSPTRG00000012419 ortholog_one2one 5 retrogenes
retro_ptro_1072, retro_ptro_1077, retro_ptro_1080, retro_ptro_1378, retro_ptro_415,
Pteropus vampyrus ENSPVAG00000016707 ortholog_one2one 1 retrogene
retro_pvam_134,
Sorex araneus ENSSARG00000006252 ortholog_one2one 1 retrogene
retro_sara_362,
Tupaia belangeri ENSTBEG00000001123 ortholog_one2one 4 retrogenes
retro_tbel_1731, retro_tbel_3479, retro_tbel_4589, retro_tbel_926,
Vicugna pacos ENSVPAG00000005847 ortholog_one2one 2 retrogenes
retro_vpac_136, retro_vpac_265,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_91 86.01 60.26
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2. retro_eeur_530 62.71 73.50
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3. retro_eeur_550 91.45 100.00
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Download FASTA sequences of all ENSEEUG00000008535 retrocopies