RetrogeneDB ID: | retro_dnov_1869 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_3435:155823..156348(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKI67IP | ||
Ensembl ID: | ENSDNOG00000005017 | ||
Aliases: | None | ||
Description: | MKI67 (FHA domain) interacting nucleolar phosphoprotein [Source:HGNC Symbol;Acc:17838] |
Percent Identity: | 92. % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EFMPSEKVHEELFKDWDVPFAKPSRPAVKRYNKKRTLIEKLQMEKRFKNKEKLLRKKLAQKGINYDFPSL |
E.MPSEKVHEELFKDWDVPFAKPS.PAVKRYNKKRTLIEKLQMEKRFKNKEKLLRKKLAQKGINYDFPSL | |
Retrocopy | ELMPSEKVHEELFKDWDVPFAKPSLPAVKRYNKKRTLIEKLQMEKRFKNKEKLLRKKLAQKGINYDFPSL |
Parental | ILRKEKKNASNTVLQKSTKGQ-FSRKKKQVVPGTPNTPKNTGDSQGPTPVCTPTFLERRKSEVAEMNDDE |
ILRKEK.NASNTVLQKSTKGQ.F..KKKQVVPGTP.TPKNTGD..GPTPVCTPTFLE.R.SEVAEM.DDE | |
Retrocopy | ILRKEKENASNTVLQKSTKGQLFPSKKKQVVPGTPDTPKNTGDRPGPTPVCTPTFLEKRNSEVAEMSDDE |
Parental | DNEIVFKQPISSAKEETQETKTPTRSGKKRRRKSK |
DNEIVFKQPISSAKEETQ.TKTPT.SGKKRRRKSK | |
Retrocopy | DNEIVFKQPISSAKEETQGTKTPTCSGKKRRRKSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 5 .83 RPM | 46 .28 RPM |
SRP012922_cerebellum | 3 .30 RPM | 23 .09 RPM |
SRP012922_heart | 2 .78 RPM | 11 .83 RPM |
SRP012922_kidney | 3 .83 RPM | 23 .82 RPM |
SRP012922_liver | 2 .17 RPM | 25 .39 RPM |
SRP012922_lung | 6 .26 RPM | 37 .42 RPM |
SRP012922_quadricep_muscle | 5 .37 RPM | 20 .25 RPM |
SRP012922_spleen | 8 .81 RPM | 53 .22 RPM |