RetrogeneDB ID: | retro_mmul_2151 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:56949179..56949936(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3939 | ||
Ensembl ID: | ENSMMUG00000020928 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.65 % |
Parental protein coverage: | 86.01 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | ERLTSGVVYVGHLPNLLNETQIFSYFSQF-GTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN |
E.L.SGVVYV.HL.NLL.ETQI.SYFSQF.GTVTRFRLSR.KR.GNSK.YAFVEF.SED.AKIVAETMNN | |
Retrocopy | EQLSSGVVYVCHLHNLLKETQILSYFSQFQGTVTRFRLSRNKRLGNSKSYAFVEFKSEDFAKIVAETMNN |
Parental | YLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSHPSVK-RYNRNR-TLTQKLRMEERFKKKERLLRKKL |
YLFGERLLE.HFMPPEKV.KELF.DWNIPFKQPS.PSVK..YN.N...LTQKL..EE.FKKKERL.RKKL | |
Retrocopy | YLFGERLLENHFMPPEKVQKELFQDWNIPFKQPSYPSVK<MYN*NQ<ALTQKLWKEE*FKKKERLFRKKL |
Parental | AKKGIDYDFPSLILQKTEGVSKTNRQTSTKGQVLRKKKKKVLGTPNVPEKTVDSQGPTPVCTPTFLERRK |
..K.IDYDFPSLILQK.E..SK.N.Q.STK.QVL.KKKKKVLGT...PE.TVD..GPT.VCT.TFL...K | |
Retrocopy | S*KEIDYDFPSLILQKMESISKMNCQMSTKAQVLSKKKKKVLGTSDTPEETVDI*GPTLVCTSTFLKKQK |
Parental | SEVAELNDDDKDNEIVFKEPISCVKEEIQETQTPTHSRKKRRRKS |
SEVAE.NDDD.DNEIVFK.PISCVKEEIQETQTPTHS.K.....S | |
Retrocopy | SEVAEMNDDDEDNEIVFKQPISCVKEEIQETQTPTHSQKTKKKQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 9 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .24 RPM |
SRP007412_heart | 0 .00 RPM | 7 .36 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .74 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .19 RPM | 10 .63 RPM |