RetrogeneDB ID: | retro_eeur_530 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_340388:11506..12029(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKI67IP | ||
Ensembl ID: | ENSEEUG00000008535 | ||
Aliases: | None | ||
Description: | MKI67 (FHA domain) interacting nucleolar phosphoprotein [Source:HGNC Symbol;Acc:17838] |
Percent Identity: | 62.71 % |
Parental protein coverage: | 73.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SYFSQFGAVKRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNN-YLFGERLLK-CHFVPHEKVHEEL |
SYFSQ.GAVKRFRL.R.KRTG.SKGY.FVEFESEDVAK..AETMNN...F....LK.CHF.PHEKVHE.L | |
Retrocopy | SYFSQYGAVKRFRLPRIKRTGSSKGYVFVEFESEDVAKVIAETMNN*ESFWRKTLK>CHFIPHEKVHE*L |
Parental | FKNCCVPFRKPSFPAVKR-YNQTRSLLQKLQMERRFQKKENLLRKKLAKKGIDYE-FSPLILHKKG-KKS |
FKN..V.F.KPSFP.VKR.YN...SLLQKLQME.RF.K....L........I.Y..F.P.....K..K.S | |
Retrocopy | FKNGYVLFKKPSFPVVKR>YNHVWSLLQKLQMEKRFKKRKKKLTQEETG*KINYD<FFPSLILHKNEKES |
Parental | ASSADPDMSTKSQVLPKKKKKKISVSSDTPEKTVDSQ |
AS.A....STKSQVL.KKKKK..S....TPEKT.D.Q | |
Retrocopy | ASNATSNTSTKSQVLSKKKKKMVSIRYNTPEKTEDCQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .06 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .75 RPM |
SRP017611_liver | 0 .00 RPM | 4 .34 RPM |