RetrogeneDB ID: | retro_eeur_550 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_342587:46473..47166(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKI67IP | ||
Ensembl ID: | ENSEEUG00000008535 | ||
Aliases: | None | ||
Description: | MKI67 (FHA domain) interacting nucleolar phosphoprotein [Source:HGNC Symbol;Acc:17838] |
Percent Identity: | 91.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAVFAGPAKPLLSLSPKDDTRFQKEVVQVRRRAVQQQKKEKPSSGVIYVGHLPSTIYESQIKSYFSQFGA |
M.VFAGPAKPLLSLSPKDDTRFQKEVVQVRRRAV.QQKKEKP.SGVIYVGHLPSTIYESQIK.YFSQFGA | |
Retrocopy | MQVFAGPAKPLLSLSPKDDTRFQKEVVQVRRRAVPQQKKEKPASGVIYVGHLPSTIYESQIKPYFSQFGA |
Parental | VKRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLKCHFVPHEKVHEELFKNCCVPFRK |
VKRFRLSRSKRTGNSKGYAFVEFESEDV.KIVAETMNNYLFGERLLKCHFVPHEKVHEELF.NCCVPFRK | |
Retrocopy | VKRFRLSRSKRTGNSKGYAFVEFESEDVTKIVAETMNNYLFGERLLKCHFVPHEKVHEELFRNCCVPFRK |
Parental | PSFPAVKRYNQTRSLLQKLQMERRFQKKENLLRKKLAKKGIDYEFSPLILHKKGKKSASSADPDMSTKSQ |
PSFPAVKRYN..RSLLQKLQM..RFQKKENLLRKKLAKKGIDYEFSPLILH.K....ASSAD.DMSTKSQ | |
Retrocopy | PSFPAVKRYNHDRSLLQKLQMAWRFQKKENLLRKKLAKKGIDYEFSPLILH*KXXXXASSADSDMSTKSQ |
Parental | VLPKKKKKKISVSSDTPEKTVDSQ |
VLPKKK...ISVSSDTP.KTVDSQ | |
Retrocopy | VLPKKK---ISVSSDTPKKTVDSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .42 RPM | 3 .06 RPM |
SRP017611_kidney | 4 .13 RPM | 6 .75 RPM |
SRP017611_liver | 2 .57 RPM | 4 .34 RPM |