RetrogeneDB ID: | retro_ggor_850 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:7803834..7804697(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MKI67IP | ||
Ensembl ID: | ENSGGOG00000023498 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.85 % |
Parental protein coverage: | 99.32 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGT |
MA.FS.PAGPILSLNPQEDVEFQKEV..V.K..TQ.K.QEQLTPGVV.V.H...LL.ETQIFSYFSQFGT | |
Retrocopy | MAAFSVPAGPILSLNPQEDVEFQKEVVEVCKCTTQQKEQEQLTPGVVFVCH---LLNETQIFSYFSQFGT |
Parental | VTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQ |
VT.FRL.RSKRTGNSKGYA...FE.EDVAKIV.ETMNNYLFGERLLECH..PPEKVHKELFKDWNIPFKQ | |
Retrocopy | VTWFRLFRSKRTGNSKGYASAKFEFEDVAKIVDETMNNYLFGERLLECHYVPPEKVHKELFKDWNIPFKQ |
Parental | PSY-PSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPSLILQKTESISKTNHQMSTKGQV |
PSY..SVK.YN.NRTLTQKL.MEE.FKKK.RLLRKK.AKKGIDYDFPSLILQKTESI.KTNH..STKGQV | |
Retrocopy | PSY<SSVKCYNQNRTLTQKLQMEE*FKKKQRLLRKK*AKKGIDYDFPSLILQKTESILKTNHPTSTKGQV |
Parental | LRKKKKKVSGTLDTPEKTVDSQGPTPVCTPTFLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQT |
....KKKV.GTLDTPEKTVDSQGPTPVCTP.FLER.KS.VAE.NDDDK..EIVF.QPISC.KEEIQETQT | |
Retrocopy | FY*EKKKVFGTLDTPEKTVDSQGPTPVCTPIFLERQKSEVAEMNDDDKYNEIVF*QPISCIKEEIQETQT |
Parental | PTHSRKKRRRRS |
PTHS.KK....S | |
Retrocopy | PTHSQKKEEKQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .86 RPM |
SRP007412_cerebellum | 0 .04 RPM | 6 .07 RPM |
SRP007412_heart | 0 .00 RPM | 1 .97 RPM |
SRP007412_kidney | 0 .00 RPM | 13 .70 RPM |
SRP007412_liver | 0 .00 RPM | 9 .07 RPM |
SRP007412_testis | 0 .52 RPM | 15 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1077 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019387 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000002227 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000013386 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005017 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008535 | 3 retrocopies | |
Homo sapiens | ENSG00000155438 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000023498 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000030731 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015787 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006481 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020928 | 11 retrocopies | |
Monodelphis domestica | ENSMODG00000000152 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001163 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000025875 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012419 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016707 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006252 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001123 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000005847 | 2 retrocopies |