RetrogeneDB ID: | retro_mmul_752 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214803436:689..1236(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3939 | ||
Ensembl ID: | ENSMMUG00000020928 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.92 % |
Parental protein coverage: | 62.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TSGVVYVGHLPNLLNETQIFSYFSQF-GTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLF |
.SGVVYV.HL.NLL.ETQI.SYFSQF.GTVTRFRLSR.KR.GNSKG.AFVEF.SED.AKIVAETMNNYLF | |
Retrocopy | SSGVVYVCHLHNLLKETQILSYFSQFQGTVTRFRLSRNKRLGNSKGCAFVEFKSEDFAKIVAETMNNYLF |
Parental | GERLLECHFMPPEKVHKELFKDWNIPFKQPSHPSVK-RYNRNR-TLTQKLRMEERFKKKERLLRKKLAKK |
GERLLE.HFMPPEKV.KELF.DWNIPFKQPS.PSVK..YN.N...LTQKL...ERFKKKERLLRKKLA.K | |
Retrocopy | GERLLENHFMPPEKVQKELFQDWNIPFKQPSYPSVK<MYN*NQ<ALTQKLHKKERFKKKERLLRKKLA*K |
Parental | GIDYDFPSLILQKTEGVSKTNRQTSTKGQVLRKKKKKVLGTPNVP |
GI.YDFPSLILQK.E..SK.N.Q.STK.Q.L.KKKKKV.GT...P | |
Retrocopy | GIEYDFPSLILQKMESISKMNCQMSTKAQILCKKKKKVSGTSDNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 9 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .24 RPM |
SRP007412_heart | 0 .00 RPM | 7 .36 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .74 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .00 RPM | 10 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019387 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000002227 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000013386 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005017 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008535 | 3 retrocopies | |
Homo sapiens | ENSG00000155438 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000023498 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000030731 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015787 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006481 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020928 | 11 retrocopies | |
Monodelphis domestica | ENSMODG00000000152 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001163 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000025875 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012419 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016707 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006252 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001123 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000005847 | 2 retrocopies |