Parental gene: | HMGB2, ENSEEUG00000012238 |
| Aliases: | None |
| Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | scaffold_328802:6263..7653(+) |
>ENSEEUG00000012238
ATGGGCAAAGGAGACCCCAACAAGCCGCGGGGCAAGATGTCCTCGTACGCCTTCTTCGTGCAGACGTGCCGGGAGGAGCA
CAAAAAGAAGCACCCCGACTCCTCCGTCAACTTTGCCGAGTTCTCCAAGAAGTGTTCGGAGAGATGGAAGACCATGTCTG
CAAAGGAAAAGTCAAAGTTTGAAGATATGGCAAAAAGTGACAAGGCTCGCTATGACAGGGAGATGAAAAATTATGTCCCT
CCTAAAGGCGATAAGAAAGGAAAGAAAAAGGATCCCAATGCTCCTAAAAGGCCTCCATCTGCTTTCTTCCTGTTTTGCTC
TAAACATCACCCAAAGATCAAAAGTGAACACCCTGGCCTATCCCATTGGGATACTGCAAAGAAATTAGGTGAAATGTGGT
CTGAACAGTCAGCTAAGGATAAACAGCCATATGAGCAGACAGCAGCTAACCTAACGGAAAAATGTGAAAAGGATATTGCT
TCATACCGTGCCAAGGGCAAAAGTGAAGCAGGAAAGAGGGGCCCTGGCAGGCCAATAGGCTCAAAGAAGAATGAGCCAGA
TGATGATGAGGAGGAAGAAGATGAAGATGAAGGAGAGGAGGAAGATGAAGAATAG
ATGGGCAAAGGAGACCCCAACAAGCCGCGGGGCAAGATGTCCTCGTACGCCTTCTTCGTGCAGACGTGCCGGGAGGAGCA
CAAAAAGAAGCACCCCGACTCCTCCGTCAACTTTGCCGAGTTCTCCAAGAAGTGTTCGGAGAGATGGAAGACCATGTCTG
CAAAGGAAAAGTCAAAGTTTGAAGATATGGCAAAAAGTGACAAGGCTCGCTATGACAGGGAGATGAAAAATTATGTCCCT
CCTAAAGGCGATAAGAAAGGAAAGAAAAAGGATCCCAATGCTCCTAAAAGGCCTCCATCTGCTTTCTTCCTGTTTTGCTC
TAAACATCACCCAAAGATCAAAAGTGAACACCCTGGCCTATCCCATTGGGATACTGCAAAGAAATTAGGTGAAATGTGGT
CTGAACAGTCAGCTAAGGATAAACAGCCATATGAGCAGACAGCAGCTAACCTAACGGAAAAATGTGAAAAGGATATTGCT
TCATACCGTGCCAAGGGCAAAAGTGAAGCAGGAAAGAGGGGCCCTGGCAGGCCAATAGGCTCAAAGAAGAATGAGCCAGA
TGATGATGAGGAGGAAGAAGATGAAGATGAAGGAGAGGAGGAAGATGAAGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 3 .70 RPM |
| SRP017611_kidney | 3 .56 RPM |
| SRP017611_brain | 2 .26 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000015101 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003552 | ortholog_one2one | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000019440 | possible_ortholog | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000010379 | possible_ortholog | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000016379 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000004218 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000164104 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015882 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000002256 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000003527 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006662 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000015204 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000016597 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013167 | ortholog_one2many | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000015650 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_49 | 74.80 | 60.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_54 | 75.29 | 83.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_86 | 77.06 | 82.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_eeur_118 | 78.49 | 82.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_eeur_223 | 68.39 | 84.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_eeur_345 | 75.61 | 80.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_eeur_661 | 71.43 | 65.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_eeur_702 | 76.44 | 85.29 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000012238 retrocopies