RetrogeneDB ID: | retro_eeur_49 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_2638:46564..46931(+) | ||
Located in intron of: | ENSEEUG00000003747 | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003943 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB2 | ||
Ensembl ID: | ENSEEUG00000012238 | ||
Aliases: | None | ||
Description: | high mobility group box 2 [Source:HGNC Symbol;Acc:5000] |
Percent Identity: | 74.8 % |
Parental protein coverage: | 60.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKAR |
MGKGDP.KPRGKMSSYAFFVQTC.EEHKKKH...SVNF.EFSKKCSE.WKTMSAKEK.KFEDMAK.DKAR | |
Retrocopy | MGKGDPKKPRGKMSSYAFFVQTCCEEHKKKH--ASVNFSEFSKKCSEKWKTMSAKEKGKFEDMAKADKAR |
Parental | YDREMKNY-VPPKGDKKGKKKDPNAPK-RPPSAFF-LFCSKHHPKIKSEHPGLS-HW |
Y.REMK.Y....KG..K.K.KDP.APK...P...F.LFCS...PKIK.EHPGLS.HW | |
Retrocopy | YEREMKTY>XXXKGETKKKFKDPKAPK>KRPLSAFFLFCSEYRPKIKGEHPGLS<HW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 14 .02 RPM | 2 .26 RPM |
SRP017611_kidney | 18 .19 RPM | 3 .56 RPM |
SRP017611_liver | 8 .68 RPM | 3 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015101 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003552 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019440 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000012238 | 8 retrocopies |
retro_eeur_118, retro_eeur_223, retro_eeur_345, retro_eeur_49 , retro_eeur_54, retro_eeur_661, retro_eeur_702, retro_eeur_86,
|
Echinops telfairi | ENSETEG00000010379 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000016379 | 1 retrocopy | |
Felis catus | ENSFCAG00000004218 | 2 retrocopies | |
Homo sapiens | ENSG00000164104 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015882 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002256 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003527 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006662 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000015204 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016597 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000013167 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000015650 | 1 retrocopy |