Parental gene:

HMGB2, ENSBTAG00000015101

Aliases:None
Description:High mobility group protein B2 [Source:UniProtKB/Swiss-Prot;Acc:P40673]
Organism:Cow (Bos taurus)
Coordinates:8:5583683..5586018(-)


>ENSBTAG00000015101
ATGGGGAAGGGCGACCCCAACAAGCCGCGGGGCAAGATGTCTTCGTACGCCTTCTTCGTGCAGACCTGCCGCGAGGAGCA
CAAGAAGAAGCATCCCGACTCCTCAGTCAATTTCGCAGAGTTTTCCAAGAAATGTTCCGAGAGATGGAAGACCATGTCGG
CCAAGGAAAAGTCCAAGTTCGAAGACATGGCAAAAAGTGACAAAGCTCGCTACGACAGGGAAATGAAAAATTATGTCCCT
CCTAAAGGTGACAAGAAGGGAAAGAAAAAAGATCCCAACGCTCCGAAAAGGCCTCCATCTGCCTTCTTCCTGTTTTGCTC
CGAACATCGCCCAAAGATCAAAAGCGAACACCCTGGCTTATCCATTGGGGATACTGCAAAAAAATTGGGTGAAATGTGGT
CTGAGCAGTCAGCCAAAGATAAACAGCCGTATGAACAGAAAGCAGCTAAGCTAAAGGAGAAATACGAAAAGGATATTGCT
GCATACCGTGCCAAGGGCAAGAGTGAAGCGGGAAAAAAGGGCCCTGGCAGGCCGACAGGCTCCAAGAAGAAGAATGAACC
AGAAGATGAGGAAGAAGAAGAGGAGGAGGAAGATGAAGATGAGGAGGAGGAGGATGAAGATGAGGAATAA

Library Parental gene expression (RPM)
ERP005899_liver 6 .42 RPM
ERP005899_muscle 36 .74 RPM
SRP017611_brain 6 .90 RPM
SRP017611_kidney 9 .90 RPM
SRP017611_liver 3 .02 RPM
SRP030211_testis 63 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005150 within_species_paralog 2 retrogenes
retro_btau_190, retro_btau_38,
Bos taurus ENSBTAG00000018103 other_paralog 2 retrogenes
retro_btau_1551, retro_btau_224,
Callithrix jacchus ENSCJAG00000005112 ortholog_one2one 2 retrogenes
retro_cjac_2555, retro_cjac_832,
Cavia porcellus ENSCPOG00000003552 ortholog_one2one 4 retrogenes
retro_cpor_1100, retro_cpor_604, retro_cpor_890, retro_cpor_980,
Dasypus novemcinctus ENSDNOG00000019440 possible_ortholog 4 retrogenes
retro_dnov_1142, retro_dnov_1457, retro_dnov_454, retro_dnov_532,
Erinaceus europaeus ENSEEUG00000012238 ortholog_one2one 8 retrogenes
retro_eeur_118, retro_eeur_223, retro_eeur_345, retro_eeur_49, retro_eeur_54, retro_eeur_661, retro_eeur_702, retro_eeur_86,
Echinops telfairi ENSETEG00000010379 ortholog_one2many 3 retrogenes
retro_etel_1474, retro_etel_1841, retro_etel_2023,
Echinops telfairi ENSETEG00000016379 possible_ortholog 1 retrogene
retro_etel_414,
Felis catus ENSFCAG00000004218 ortholog_one2many 2 retrogenes
retro_fcat_279, retro_fcat_52,
Homo sapiens ENSG00000164104 ortholog_one2one 1 retrogene
retro_hsap_3663,
Gorilla gorilla ENSGGOG00000015882 ortholog_one2one 1 retrogene
retro_ggor_2474,
Loxodonta africana ENSLAFG00000010417 ortholog_one2one 3 retrogenes
retro_lafr_1096, retro_lafr_1142, retro_lafr_595,
Macropus eugenii ENSMEUG00000002256 ortholog_one2many 3 retrogenes
retro_meug_1920, retro_meug_1989, retro_meug_550,
Myotis lucifugus ENSMLUG00000026303 ortholog_one2one 4 retrogenes
retro_mluc_1113, retro_mluc_1381, retro_mluc_1726, retro_mluc_2011,
Monodelphis domestica ENSMODG00000003527 ortholog_one2many 3 retrogenes
retro_mdom_1160, retro_mdom_1919, retro_mdom_69,
Mustela putorius furo ENSMPUG00000001919 ortholog_one2one 9 retrogenes
retro_mputfur_1134, retro_mputfur_1167, retro_mputfur_1379, retro_mputfur_1475, retro_mputfur_1631, retro_mputfur_1633, retro_mputfur_1644, retro_mputfur_940, retro_mputfur_989,
Mus musculus ENSMUSG00000054717 ortholog_one2one 23 retrogenes
retro_mmus_1477, retro_mmus_1745, retro_mmus_1974, retro_mmus_1975, retro_mmus_2269, retro_mmus_2527, retro_mmus_2528, retro_mmus_2529, retro_mmus_2530, retro_mmus_2531, retro_mmus_2843, retro_mmus_2884, retro_mmus_3248, retro_mmus_3426, retro_mmus_461, retro_mmus_626, retro_mmus_642, retro_mmus_796, retro_mmus_861, retro_mmus_901, retro_mmus_902, retro_mmus_904, retro_mmus_905,
Nomascus leucogenys ENSNLEG00000006662 ortholog_one2one 3 retrogenes
retro_nleu_113, retro_nleu_517, retro_nleu_550,
Oryctolagus cuniculus ENSOCUG00000000074 ortholog_one2one 1 retrogene
retro_ocun_1829,
Otolemur garnettii ENSOGAG00000017149 ortholog_one2one 3 retrogenes
retro_ogar_3117, retro_ogar_3323, retro_ogar_3336,
Pongo abelii ENSPPYG00000015204 ortholog_one2one 3 retrogenes
retro_pabe_297, retro_pabe_3005, retro_pabe_3380,
Pan troglodytes ENSPTRG00000016597 ortholog_one2one 3 retrogenes
retro_ptro_19, retro_ptro_2484, retro_ptro_2789,
Pteropus vampyrus ENSPVAG00000014656 possible_ortholog 1 retrogene
retro_pvam_872,
Rattus norvegicus ENSRNOG00000013167 ortholog_one2many 2 retrogenes
retro_rnor_173, retro_rnor_54,
Ictidomys tridecemlineatus ENSSTOG00000023980 ortholog_one2one 2 retrogenes
retro_itri_1720, retro_itri_880,
Tursiops truncatus ENSTTRG00000015650 ortholog_one2one 1 retrogene
retro_ttru_1640,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_58 98.94 89.95
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSBTAG00000015101 retrocopies