RetrogeneDB ID: | retro_fcat_52 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:94274159..94274759(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028961 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004218 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.5 % |
Parental protein coverage: | 95.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKAR |
MGKGDP.KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMS.KEKSKFEDMAKSDKAR | |
Retrocopy | MGKGDPSKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSEKEKSKFEDMAKSDKAR |
Parental | YDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKD |
YDREMKN.VPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL.IGD.AKKLGEMWSEQSAKD | |
Retrocopy | YDREMKNCVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLPIGDIAKKLGEMWSEQSAKD |
Parental | KQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEDE |
KQPYEQKAAKLKEKY.KDIAAYR.KGKSE.GKKGPGRPTGSKKKNEPED.EEEEEEEEDE | |
Retrocopy | KQPYEQKAAKLKEKYGKDIAAYRTKGKSEVGKKGPGRPTGSKKKNEPEDKEEEEEEEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 6 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .00 RPM |
SRP017611_liver | 0 .00 RPM | 6 .77 RPM |