RetrogeneDB - Parental gene ENSG00000164104 details

							
>ENSG00000164104
ATGGGTAAAGGAGACCCCAACAAGCCGCGGGGCAAAATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCCGGGAAGAGCA

CAAGAAGAAACACCCGGACTCTTCCGTCAATTTCGCGGAATTCTCCAAGAAGTGTTCGGAGAGATGGAAGACCATGTCTG

CAAAGGAGAAGTCGAAGTTTGAAGATATGGCAAAAAGTGACAAAGCTCGCTATGACAGGGAGATGAAAAATTACGTTCCT

CCCAAAGGTGATAAGAAGGGGAAGAAAAAGGACCCCAATGCTCCTAAAAGGCCACCATCTGCCTTCTTCCTGTTTTGCTC

TGAACATCGCCCAAAGATCAAAAGTGAACACCCTGGCCTATCCATTGGGGATACTGCAAAGAAATTGGGTGAAATGTGGT

CTGAGCAGTCAGCCAAAGATAAACAACCATATGAACAGAAAGCAGCTAAGCTAAAGGAGAAATATGAAAAGGATATTGCT

GCATATCGTGCCAAGGGCAAAAGTGAAGCAGGAAAGAAGGGCCCTGGCAGGCCAACAGGCTCAAAGAAGAAGAACGAACC

AGAAGATGAGGAGGAGGAGGAGGAAGAAGAAGATGAAGATGAGGAGGAAGAGGATGAAGATGAAGAATAA

Library	Parental gene expression (RPM)
bodymap2_liver	7 .10 RPM
bodymap2_lung	70 .96 RPM
bodymap2_breast	34 .90 RPM
bodymap2_adipose	100 .50 RPM
bodymap2_adrenal	44 .52 RPM
bodymap2_skeletal_muscle	22 .17 RPM
bodymap2_thyroid	76 .85 RPM
bodymap2_prostate	80 .52 RPM
bodymap2_colon	110 .08 RPM
bodymap2_testis	114 .85 RPM
bodymap2_brain	34 .97 RPM
bodymap2_heart	23 .35 RPM
bodymap2_white_blood_cells	137 .44 RPM
bodymap2_lymph_node	78 .98 RPM
bodymap2_ovary	66 .83 RPM
bodymap2_kidney	35 .30 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000015101	ortholog_one2one	1 retrogene	retro_btau_58,
Callithrix jacchus	ENSCJAG00000005112	ortholog_one2one	2 retrogenes	retro_cjac_2555, retro_cjac_832,
Cavia porcellus	ENSCPOG00000003552	ortholog_one2one	4 retrogenes	retro_cpor_1100, retro_cpor_604, retro_cpor_890, retro_cpor_980,
Dasypus novemcinctus	ENSDNOG00000019440	possible_ortholog	4 retrogenes	retro_dnov_1142, retro_dnov_1457, retro_dnov_454, retro_dnov_532,
Erinaceus europaeus	ENSEEUG00000012238	ortholog_one2one	8 retrogenes	retro_eeur_118, retro_eeur_223, retro_eeur_345, retro_eeur_49, retro_eeur_54, retro_eeur_661, retro_eeur_702, retro_eeur_86,
Echinops telfairi	ENSETEG00000010379	ortholog_one2many	3 retrogenes	retro_etel_1474, retro_etel_1841, retro_etel_2023,
Echinops telfairi	ENSETEG00000016379	possible_ortholog	1 retrogene	retro_etel_414,
Felis catus	ENSFCAG00000004218	ortholog_one2many	2 retrogenes	retro_fcat_279, retro_fcat_52,
Homo sapiens	ENSG00000029993	within_species_paralog	8 retrogenes	retro_hsap_1461, retro_hsap_1873, retro_hsap_2621, retro_hsap_3064, retro_hsap_3683, retro_hsap_4251, retro_hsap_4904, retro_hsap_627,
Homo sapiens	ENSG00000189403	other_paralog	37 retrogenes	retro_hsap_1230, retro_hsap_1357, retro_hsap_1504, retro_hsap_1589, retro_hsap_1608, retro_hsap_176, retro_hsap_1832, retro_hsap_1954, retro_hsap_2103, retro_hsap_2192, retro_hsap_2219, retro_hsap_2228, retro_hsap_2340, retro_hsap_2490, retro_hsap_2552, retro_hsap_2613, retro_hsap_2660, retro_hsap_2858, retro_hsap_2947, retro_hsap_3317, retro_hsap_3340, retro_hsap_3592, retro_hsap_3615, retro_hsap_3666, retro_hsap_382, retro_hsap_3942, retro_hsap_4003, retro_hsap_4109, retro_hsap_4309, retro_hsap_4669, retro_hsap_470, retro_hsap_4738, retro_hsap_4832, retro_hsap_525, retro_hsap_554, retro_hsap_758, retro_hsap_933,
Gorilla gorilla	ENSGGOG00000015882	ortholog_one2one	1 retrogene	retro_ggor_2474,
Loxodonta africana	ENSLAFG00000010417	ortholog_one2one	3 retrogenes	retro_lafr_1096, retro_lafr_1142, retro_lafr_595,
Macropus eugenii	ENSMEUG00000002256	ortholog_one2one	3 retrogenes	retro_meug_1920, retro_meug_1989, retro_meug_550,
Myotis lucifugus	ENSMLUG00000026303	ortholog_one2one	4 retrogenes	retro_mluc_1113, retro_mluc_1381, retro_mluc_1726, retro_mluc_2011,
Monodelphis domestica	ENSMODG00000003527	ortholog_one2one	3 retrogenes	retro_mdom_1160, retro_mdom_1919, retro_mdom_69,
Mustela putorius furo	ENSMPUG00000001919	ortholog_one2one	9 retrogenes	retro_mputfur_1134, retro_mputfur_1167, retro_mputfur_1379, retro_mputfur_1475, retro_mputfur_1631, retro_mputfur_1633, retro_mputfur_1644, retro_mputfur_940, retro_mputfur_989,
Mus musculus	ENSMUSG00000054717	ortholog_one2one	23 retrogenes	retro_mmus_1477, retro_mmus_1745, retro_mmus_1974, retro_mmus_1975, retro_mmus_2269, retro_mmus_2527, retro_mmus_2528, retro_mmus_2529, retro_mmus_2530, retro_mmus_2531, retro_mmus_2843, retro_mmus_2884, retro_mmus_3248, retro_mmus_3426, retro_mmus_461, retro_mmus_626, retro_mmus_642, retro_mmus_796, retro_mmus_861, retro_mmus_901, retro_mmus_902, retro_mmus_904, retro_mmus_905,
Nomascus leucogenys	ENSNLEG00000006662	ortholog_one2one	3 retrogenes	retro_nleu_113, retro_nleu_517, retro_nleu_550,
Oryctolagus cuniculus	ENSOCUG00000000074	ortholog_one2one	1 retrogene	retro_ocun_1829,
Otolemur garnettii	ENSOGAG00000017149	ortholog_one2one	3 retrogenes	retro_ogar_3117, retro_ogar_3323, retro_ogar_3336,
Pongo abelii	ENSPPYG00000015204	ortholog_one2one	3 retrogenes	retro_pabe_297, retro_pabe_3005, retro_pabe_3380,
Pan troglodytes	ENSPTRG00000016597	ortholog_one2one	3 retrogenes	retro_ptro_19, retro_ptro_2484, retro_ptro_2789,
Rattus norvegicus	ENSRNOG00000013167	ortholog_one2many	2 retrogenes	retro_rnor_173, retro_rnor_54,
Ictidomys tridecemlineatus	ENSSTOG00000023980	ortholog_one2one	2 retrogenes	retro_itri_1720, retro_itri_880,
Tursiops truncatus	ENSTTRG00000015650	ortholog_one2one	1 retrogene	retro_ttru_1640,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_hsap_3663	60.49	76.08	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSG00000164104 retrocopies

Parental gene:	HMGB2, ENSG00000164104
Aliases:	None
Description:	high mobility group box 2 [Source:HGNC Symbol;Acc:5000]
Organism:	*Human (Homo sapiens)*
Coordinates:	4:174252845..174256276(-)

Parental gene:

HMGB2, ENSG00000164104