Parental gene:

TMX1, ENSG00000139921

Aliases:None
Description:thioredoxin-related transmembrane protein 1 [Source:HGNC Symbol;Acc:15487]
Organism:Human (Homo sapiens)
Coordinates:14:51706879..51722759(+)


>ENSG00000139921
ATGGCGCCCTCCGGGAGTCTTGCAGTTCCCCTGGCAGTCCTGGTGCTGTTGCTTTGGGGTGCTCCCTGGACGCACGGGCG
GCGGAGCAACGTTCGCGTCATCACGGACGAGAACTGGAGAGAACTGCTGGAAGGAGACTGGATGATAGAATTTTATGCCC
CGTGGTGCCCTGCTTGTCAAAATCTTCAACCGGAATGGGAAAGTTTTGCTGAATGGGGAGAAGATCTTGAGGTTAATATT
GCGAAAGTAGATGTCACAGAGCAGCCAGGACTGAGTGGACGGTTTATCATAACTGCTCTTCCTACTATTTATCATTGTAA
AGATGGTGAATTTAGGCGCTATCAGGGTCCAAGGACTAAGAAGGACTTCATAAACTTTATAAGTGATAAAGAGTGGAAGA
GTATTGAGCCCGTTTCATCATGGTTTGGTCCAGGTTCTGTTCTGATGAGTAGTATGTCAGCACTCTTTCAGCTATCTATG
TGGATCAGGACTTGCCATAACTACTTTATTGAAGACCTTGGATTGCCAGTGTGGGGATCATATACTGTTTTTGCTTTAGC
AACTCTGTTTTCCGGACTGTTATTAGGACTCTGTATGATATTTGTGGCAGATTGCCTTTGTCCTTCAAAAAGGCGCAGAC
CACAGCCGTACCCATACCCTTCAAAAAAATTATTATCAGAATCTGCACAACCTTTGAAAAAAGTGGAGGAGGAACAAGAG
GCGGATGAAGAAGATGTTTCAGAAGAAGAAGCTGAAAGTAAAGAAGGAACAAACAAAGACTTTCCACAGAATGCCATAAG
ACAACGCTCTCTGGGTCCATCATTGGCCACAGATAAATCCTAG

Library Parental gene expression (RPM)
bodymap2_adipose 77 .84 RPM
bodymap2_adrenal 66 .24 RPM
bodymap2_brain 32 .51 RPM
bodymap2_breast 68 .29 RPM
bodymap2_colon 70 .36 RPM
bodymap2_heart 18 .85 RPM
bodymap2_kidney 74 .10 RPM
bodymap2_liver 25 .92 RPM
bodymap2_lung 47 .35 RPM
bodymap2_lymph_node 67 .45 RPM
bodymap2_ovary 61 .92 RPM
bodymap2_prostate 53 .81 RPM
bodymap2_skeletal_muscle 18 .35 RPM
bodymap2_testis 68 .25 RPM
bodymap2_thyroid 80 .00 RPM
bodymap2_white_blood_cells 111 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015041 ortholog_one2one 1 retrogene
retro_amel_719,
Canis familiaris ENSCAFG00000014626 ortholog_one2one 1 retrogene
retro_cfam_796,
Choloepus hoffmanni ENSCHOG00000011305 ortholog_one2one 1 retrogene
retro_chof_1249,
Callithrix jacchus ENSCJAG00000006893 ortholog_one2one 1 retrogene
retro_cjac_1453,
Dasypus novemcinctus ENSDNOG00000016496 ortholog_one2one 1 retrogene
retro_dnov_78,
Felis catus ENSFCAG00000002780 ortholog_one2one 1 retrogene
retro_fcat_333,
Gorilla gorilla ENSGGOG00000009768 ortholog_one2one 1 retrogene
retro_ggor_2587,
Loxodonta africana ENSLAFG00000013251 ortholog_one2one 1 retrogene
retro_lafr_1214,
Macaca mulatta ENSMMUG00000001901 ortholog_one2one 1 retrogene
retro_mmul_1618,
Nomascus leucogenys ENSNLEG00000012362 ortholog_one2one 2 retrogenes
retro_nleu_1976, retro_nleu_2524,
Oryctolagus cuniculus ENSOCUG00000003980 ortholog_one2one 1 retrogene
retro_ocun_571,
Pongo abelii ENSPPYG00000005810 ortholog_one2one 2 retrogenes
retro_pabe_3058, retro_pabe_3264,
Pan troglodytes ENSPTRG00000006339 ortholog_one2one 2 retrogenes
retro_ptro_2522, retro_ptro_2695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3840 83.99 99.64
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2. retro_hsap_3970 79.58 67.86
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Download FASTA sequences of all ENSG00000139921 retrocopies