RetrogeneDB ID: | retro_nleu_1976 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397320.1:4472535..4473357(-) | ||
Located in intron of: | ENSNLEG00000003055 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMX1 | ||
Ensembl ID: | ENSNLEG00000012362 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.99 % |
Parental protein coverage: | 99.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | APSGSLAVPL-AVLVLLLWSAPWTHGRRSNVRVITDENWRELLEGDWMIEFYAPWCPACQNLQPEWESFA |
APS.SLAVPL.AVLVLLLW.APWTH...SN.R.ITD.NWR.LLEGDWMIEFYAPWCPACQNLQ.EWESFA | |
Retrocopy | APSRSLAVPL<AVLVLLLWGAPWTHRWQSNIRIITDKNWRKLLEGDWMIEFYAPWCPACQNLQLEWESFA |
Parental | EWGEDL-EVNVAKVDVTEQPGLSGRFIITALPTIYHCKDGEFRRYQGPRTKKDFINFISDKEWKSIEPVS |
EWGEDL.EVNV.KVDVTEQPGL.G.F.ITALPTIYHCKDGEFR..QGPRTKKDFINFISDKEWKSIEPVS | |
Retrocopy | EWGEDL<EVNVVKVDVTEQPGLTGQFTITALPTIYHCKDGEFRHPQGPRTKKDFINFISDKEWKSIEPVS |
Parental | SWFGPGSVLMSSMSALFQLSMWIRTCHNYFIEDLGLPVWGSYTVFALATLFSGLSLGLCMIFVADCLCPS |
SWFGPGSV.MSSMSALFQLS.WIRTCHNYFIEDL.LPVWGSYTVF.LATL.SGL.LGLCMIF.ADCLCPS | |
Retrocopy | SWFGPGSVQMSSMSALFQLSLWIRTCHNYFIEDLELPVWGSYTVFPLATLHSGLLLGLCMIFAADCLCPS |
Parental | KRRRPQPYPYPSKKLLSEPAQPLKKVEEEQEADEDVSEEEAESKEGTNKDFLQ-NAIRQRSLGPSLATDK |
.R.RPQ...YPSKKLLSE.AQPLKK.EEEQE.D.....EEA.SKEGT.K.F...NAIRQ.SLGPSLATDK | |
Retrocopy | ERHRPQ--LYPSKKLLSESAQPLKKLEEEQEVDKEDVSEEAKSKEGT-KTFHR<NAIRQYSLGPSLATDK |
Parental | S |
S | |
Retrocopy | S |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015041 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014626 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006893 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016496 | 1 retrocopy | |
Felis catus | ENSFCAG00000002780 | 1 retrocopy | |
Homo sapiens | ENSG00000139921 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009768 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013251 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001901 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012362 | 2 retrocopies |
retro_nleu_1976 , retro_nleu_2524,
|
Oryctolagus cuniculus | ENSOCUG00000003980 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005810 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006339 | 2 retrocopies |