Parental gene:

TMX1, ENSOCUG00000003980

Aliases:None
Description:thioredoxin-related transmembrane protein 1 [Source:HGNC Symbol;Acc:15487]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:17:70199857..70215453(+)


>ENSOCUG00000003980
ATGGCGCCCCCCGGGAGTCCCGTGCTTCCTCTGACAGTCTTGGTGCTGTTGCTTTGGGGGGCTCCCTGCACTTACGGGCG
GAGGAGCGACGTGCGCGTCATCACCGACGAGAACTGGAGAGAGTTGCTGGAAGGAGAGTGGATGATAGAATTTTATGCTC
CATGGTGTCCTGCTTGTCAGAATCTTCAACCAGAATGGGAAAGTTTTGCTGAATGGGGAGAAGATCTTGAAGTGAATGTT
GGAAAAGTAGATGTCACGGAGCAGACAGGACTGAGTGGACGGTTTATCATAACTGCCCTTCCTACTATTTATCATTGTAA
AGATGGTGAATTTAGGCGCTATCAGGGGCCAAGGAGCAAGAAGGACTTCATAAACTTCATAAGTGAGAAAGAGTGGAAGA
GCATTGAGCCTGTTTCATCCTGGTTTGGTCCTGGTTCTGTTCTGATGAGTAGTATGTCAGCACTCTTCCAGCTATCTATG
TATATCAGGACTTGTCATAACTATTTTATTGAAGACCTTGGATTGCCGGTTTGGGGATCATATACAGTTTTTGCTTTAGC
AACTCTGCTTTCAGGACTGTTGTTAGGACTTTGCATGATATTTTTAGCTGATTGCCTTTGTCCTTCAAAACGACGCAGAC
CACAGCCCTACCCTTCAAAGAAATCGTTGCCAGAATTTTCTCAACCTTTGAAAAAAGTGGAAGAAGAACAAGAAGCTGAT
GAGGAAGATGTTTCAGAAGAGGAAGCCAAAAATGGAGGGGGAGCAAAGAAAGACTTTGTACAGGCAGATGCCCTAAGACA
GCGTGCGGTGGGCCCCTCGCAGGCCGCAGATCAGTCCTAG

Library Parental gene expression (RPM)
SRP017611_brain 33 .55 RPM
SRP017611_kidney 45 .61 RPM
SRP017611_liver 19 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015041 ortholog_one2one 1 retrogene
retro_amel_719,
Canis familiaris ENSCAFG00000014626 ortholog_one2one 1 retrogene
retro_cfam_796,
Choloepus hoffmanni ENSCHOG00000011305 ortholog_one2one 1 retrogene
retro_chof_1249,
Callithrix jacchus ENSCJAG00000006893 ortholog_one2one 1 retrogene
retro_cjac_1453,
Dasypus novemcinctus ENSDNOG00000016496 ortholog_one2one 1 retrogene
retro_dnov_78,
Felis catus ENSFCAG00000002780 ortholog_one2one 1 retrogene
retro_fcat_333,
Homo sapiens ENSG00000139921 ortholog_one2one 2 retrogenes
retro_hsap_3840, retro_hsap_3970,
Gorilla gorilla ENSGGOG00000009768 ortholog_one2one 1 retrogene
retro_ggor_2587,
Loxodonta africana ENSLAFG00000013251 ortholog_one2one 1 retrogene
retro_lafr_1214,
Macaca mulatta ENSMMUG00000001901 ortholog_one2one 1 retrogene
retro_mmul_1618,
Nomascus leucogenys ENSNLEG00000012362 ortholog_one2one 2 retrogenes
retro_nleu_1976, retro_nleu_2524,
Pongo abelii ENSPPYG00000005810 ortholog_one2one 2 retrogenes
retro_pabe_3058, retro_pabe_3264,
Pan troglodytes ENSPTRG00000006339 ortholog_one2one 2 retrogenes
retro_ptro_2522, retro_ptro_2695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_571 77.78 91.76
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Download FASTA sequences of all ENSOCUG00000003980 retrocopies