RetrogeneDB ID: | retro_chof_1249 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_23690:3897..4340(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMX1 | ||
Ensembl ID: | ENSCHOG00000011305 | ||
Aliases: | None | ||
Description: | thioredoxin-related transmembrane protein 1 [Source:HGNC Symbol;Acc:15487] |
Percent Identity: | 89.93 % |
Parental protein coverage: | 53.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAPSGSLVVPLAV-LVLLLCEAPWIHGRRSDVRIITDANWKELLEGEWMIEFYAPWCPACQNLQPEWESF |
MA.SG.L.VPLAV.LV.LLC.APWIHG.R.DVRIITDANW.ELLEGEWMIEFYAPWCPACQNLQPEWESF | |
Retrocopy | MALSGCLMVPLAV<LVVLLCGAPWIHGPRGDVRIITDANWEELLEGEWMIEFYAPWCPACQNLQPEWESF |
Parental | AEWGEDLEINVAKVDVTEQPGLSGRFIITALPTIYHCKDGEFRRYQGLRTKKDFINFISEKEWKSIEPVS |
AEWGEDLEINVAKVDVTEQPGLSGRFII.AL.TIYHCKD.EFRRYQG.RTKKDFINFISEKE.KSIE.VS | |
Retrocopy | AEWGEDLEINVAKVDVTEQPGLSGRFIIIALSTIYHCKDDEFRRYQGPRTKKDFINFISEKEYKSIELVS |
Parental | SWLGPGSVL |
SWLGPGSVL | |
Retrocopy | SWLGPGSVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015041 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014626 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011305 | 1 retrocopy |
retro_chof_1249 ,
|
Callithrix jacchus | ENSCJAG00000006893 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016496 | 1 retrocopy | |
Felis catus | ENSFCAG00000002780 | 1 retrocopy | |
Homo sapiens | ENSG00000139921 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009768 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013251 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001901 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012362 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003980 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005810 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006339 | 2 retrocopies |