Parental gene:

TMX1, ENSPPYG00000005810

Aliases:TMX1, TXNDC1
Description:thioredoxin-related transmembrane protein 1 precursor [Source:RefSeq peptide;Acc:NP_001126776]
Organism:Orangutan (Pongo abelii)
Coordinates:14:51690838..51706013(+)


>ENSPPYG00000005810
ATGGCGCCCTCCGGGAGTCTTGCAGTTCCCCTGGCAGTCCTGGTGTTGTTGCTTTGGGGTGCTCCCTGGACGCACGGGCG
GCGGAGCAACGTTCGCGTCATCACGGACGAGAACTGGAGAGAACTGCTGGAAGGAGACTGGATGATAGAATTTTATGCCC
CGTGGTGCCCTGCTTGTCAAAATCTTCAACCGGAATGGGAAAGTTTTGCTGAATGGGGAGAAGATCTTGAGGTTAATGTT
GCGAAAGTAGATGTCACAGAGCAGCCAGGACTGAGTGGACGGTTTATCATAACTGCTCTTCCTACTATTTATCATTGTAA
AGATGGTGAATTTAGGCGCTATCAGGGTCCAAGGACTAAGAAGGACTTCATAAACTTTATAAGTGATAAAGAGTGGAAGA
GTATTGAGCCCGTTTCATCATGGTTTGGTCCAGGTTCTGTTCTGATGAGTAGTATGTCAGCACTCTTTCAGCTGTCTATG
TGGATCAGGACTTGCCATAACTACTTTATTGAAGACCTTGGATTGCCAGTGTGGGGATCATATACTGTTTTTGCTTTAGC
AACTCTATTTTCCGGACTGTTATTAGGACTCTGTATGATATTTGTGGCAGATTGCCTTTGTCCTTCAAAAAGGCGCAGAC
CACAGCCATACCCACACCCTTCAAAAAAATTATTATCAGAATCTGCACAACCTTTGAAAAAAGTGGAGGAGGAACAAGAG
GCAGATGAAGAAGATGTTTCAGAAGAAGAAGCTGAAAGTAAAGAAGGAACAAACAAAGACTTTCCACAGAATGCCATAAG
ACAACGCTCTCTGGGTCCATCATTGGCCGCAGATAAATCCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .25 RPM
SRP007412_cerebellum 6 .57 RPM
SRP007412_heart 3 .94 RPM
SRP007412_kidney 10 .31 RPM
SRP007412_liver 8 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015041 ortholog_one2one 1 retrogene
retro_amel_719,
Canis familiaris ENSCAFG00000014626 ortholog_one2one 1 retrogene
retro_cfam_796,
Choloepus hoffmanni ENSCHOG00000011305 ortholog_one2one 1 retrogene
retro_chof_1249,
Callithrix jacchus ENSCJAG00000006893 ortholog_one2one 1 retrogene
retro_cjac_1453,
Dasypus novemcinctus ENSDNOG00000016496 ortholog_one2one 1 retrogene
retro_dnov_78,
Felis catus ENSFCAG00000002780 ortholog_one2one 1 retrogene
retro_fcat_333,
Homo sapiens ENSG00000139921 ortholog_one2one 2 retrogenes
retro_hsap_3840, retro_hsap_3970,
Gorilla gorilla ENSGGOG00000009768 ortholog_one2one 1 retrogene
retro_ggor_2587,
Loxodonta africana ENSLAFG00000013251 ortholog_one2one 1 retrogene
retro_lafr_1214,
Macaca mulatta ENSMMUG00000001901 ortholog_one2one 1 retrogene
retro_mmul_1618,
Nomascus leucogenys ENSNLEG00000012362 ortholog_one2one 2 retrogenes
retro_nleu_1976, retro_nleu_2524,
Oryctolagus cuniculus ENSOCUG00000003980 ortholog_one2one 1 retrogene
retro_ocun_571,
Pan troglodytes ENSPTRG00000006339 ortholog_one2one 2 retrogenes
retro_ptro_2522, retro_ptro_2695,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3058 87.90 99.64
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2. retro_pabe_3264 77.33 61.07
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Download FASTA sequences of all ENSPPYG00000005810 retrocopies