RetrogeneDB ID: | retro_cfam_796 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 18:20439777..20440413(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMX1 | ||
Ensembl ID: | ENSCAFG00000014626 | ||
Aliases: | None | ||
Description: | thioredoxin-related transmembrane protein 1 [Source:HGNC Symbol;Acc:15487] |
Percent Identity: | 67.26 % |
Parental protein coverage: | 78.42 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MPSG-SPAVPVAVLLLLVWGAPWTHGRRSDVRIIT-DENWKELLKGEWMIEFYAPWCPACQNLQPEWESF |
MPSG.S...PVAVLLLL...APWT....SD...I....N.KELL..E.M.EFYAPWCP..QNLQPEWESF | |
Retrocopy | MPSG<SLVIPVAVLLLLFCRAPWTQEQWSDMPFIM<GKNSKELLE*ERMTEFYAPWCPIFQNLQPEWESF |
Parental | AEWGEDLEVNVAKVDVTEQPGLSGRFIITALPTIYH-CKDGEFRRYQGPRTKKDFINFISEKEWKSIEPV |
.EWGEDLE.N....DVT.Q.GLSG.F.ITALPTIYH.CK.GEFR.YQG.RTKKDF.NFISE.EW.SIEP. | |
Retrocopy | TEWGEDLEGN----DVTQQAGLSG*FTITALPTIYH<CKNGEFRCYQGSRTKKDFMNFISEQEWESIEPN |
Parental | SSWFGPGSVLMSSMSALFQLSMWIRTCHN-YFIEDLGLPVWGSYTVFALATLLSGLLLGLCMIFVADCLF |
SSWFGP.SVLMSSMSA..QLSM..RTCHN......L.....G....F.LA.LLS.L.LGLCMIFVADCLF | |
Retrocopy | SSWFGPSSVLMSSMSAFLQLSM*VRTCHN>FLLKNLDYQFGGNIQ-FYLAALLSELSLGLCMIFVADCLF |
Parental | PSK-RRRPQPYPS |
PSK...R..PY.S | |
Retrocopy | PSK<KLRTRPYHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 17 .93 RPM |
SRP017611_brain | 0 .00 RPM | 6 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .77 RPM |
SRP017611_liver | 0 .00 RPM | 8 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015041 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014626 | 1 retrocopy |
retro_cfam_796 ,
|
Choloepus hoffmanni | ENSCHOG00000011305 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006893 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016496 | 1 retrocopy | |
Felis catus | ENSFCAG00000002780 | 1 retrocopy | |
Homo sapiens | ENSG00000139921 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009768 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013251 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001901 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012362 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003980 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005810 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006339 | 2 retrocopies |