Parental gene:

NDUFS6, ENSLACG00000004625

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH129914.1:130914..144903(+)


>ENSLACG00000004625
ATGGCTGCGTCCTGTCTGCGGCTGACACCCTTTTTTCACATCCAGGGTGGACGGGCGGTCTGGACTATCTGCAAAGTGTC
TGCCAAAAACTACAGGCATCAGAATGTAGCTACGGGAGAGAAAGTCACCCACACTGGGCAGGTTTATGATAACAAGGACT
ACAGACGAGTTAGATTTGTTGGACGTCAGAAAGAGGTAAATGAAAGTTTTGCCATAGACTTAGTAGCAGAGGAACCGGTC
ACTGAGGTAGAAGACAGAGTGACCTCATGTGATGGTGGTGGTGGAGCACTTGGGCATCCAAAAGTATATATTAATTTAGA
CAAGGATACTAAAGTTGGAACTTGTGGTTACTGTGGACTACATTTTAAACAAAAGCACCACCACTAA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 26 .74 RPM
DRP000627_kidney 25 .23 RPM
DRP000627_pelvic_fin 29 .01 RPM
DRP000627_pharynx 23 .02 RPM
DRP000627_gill 19 .59 RPM
DRP000627_tail_muscle 17 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010930 ortholog_one2one 2 retrogenes
retro_amel_213, retro_amel_228,
Bos taurus ENSBTAG00000009914 ortholog_one2one 2 retrogenes
retro_btau_302, retro_btau_333,
Callithrix jacchus ENSCJAG00000019382 ortholog_one2one 1 retrogene
retro_cjac_1552,
Equus caballus ENSECAG00000021690 ortholog_one2one 3 retrogenes
retro_ecab_701, retro_ecab_838, retro_ecab_917,
Homo sapiens ENSG00000145494 ortholog_one2one 1 retrogene
retro_hsap_2838,
Loxodonta africana ENSLAFG00000005708 ortholog_one2many 1 retrogene
retro_lafr_5,
Myotis lucifugus ENSMLUG00000016888 ortholog_one2one 1 retrogene
retro_mluc_1750,
Macaca mulatta ENSMMUG00000004447 ortholog_one2one 1 retrogene
retro_mmul_1473,
Monodelphis domestica ENSMODG00000001425 ortholog_one2many 1 retrogene
retro_mdom_207,
Mus musculus ENSMUSG00000021606 ortholog_one2one 1 retrogene
retro_mmus_3044,
Nomascus leucogenys ENSNLEG00000011199 ortholog_one2one 1 retrogene
retro_nleu_1593,
Oryctolagus cuniculus ENSOCUG00000004581 ortholog_one2one 2 retrogenes
retro_ocun_1011, retro_ocun_1624,
Pongo abelii ENSPPYG00000015323 ortholog_one2one 1 retrogene
retro_pabe_2350,
Pan troglodytes ENSPTRG00000016706 ortholog_one2one 1 retrogene
retro_ptro_1924,
Rattus norvegicus ENSRNOG00000023387 ortholog_one2many 1 retrogene
retro_rnor_1619,
Rattus norvegicus ENSRNOG00000049394 ortholog_one2many 1 retrogene
retro_rnor_1618,
Sarcophilus harrisii ENSSHAG00000017779 ortholog_one2one 1 retrogene
retro_shar_176,
Ictidomys tridecemlineatus ENSSTOG00000003715 ortholog_one2one 1 retrogene
retro_itri_496,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_95 68.89 70.31
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Download FASTA sequences of all ENSLACG00000004625 retrocopies