RetrogeneDB ID: | retro_shar_176 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834539.1:2524758..2525037(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFS6 | ||
Ensembl ID: | ENSSHAG00000017779 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:7713] |
Percent Identity: | 74.19 % |
Parental protein coverage: | 60.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SPTGEKITHTGQVYDDEDYRRIRFVGRQKEVNENFAIDLIAEQPVSKVESRVISCDGGGGALGHPKVYIN |
.P...KITH.GQVYDDEDYR.I.F.G.QKEVNENFA.D.IAEQPV.KVES.VIS.D..GG.LGHPKVYIN | |
Retrocopy | TPSRKKITHVGQVYDDEDYRIICFLGHQKEVNENFATDSIAEQPVNKVES*VISYDSEGGSLGHPKVYIN |
Parental | LDKETKTGTCGYCGLQFKQHHHH |
LDKETK.G..GYC.LQ.KQ..HH | |
Retrocopy | LDKETKNGMSGYCELQLKQQYHH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010930 | 2 retrocopies | |
Bos taurus | ENSBTAG00000009914 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000019382 | 1 retrocopy | |
Equus caballus | ENSECAG00000021690 | 3 retrocopies | |
Homo sapiens | ENSG00000145494 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000004625 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005708 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016888 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004447 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001425 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021606 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011199 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004581 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015323 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016706 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023387 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000049394 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017779 | 1 retrocopy |
retro_shar_176 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000003715 | 1 retrocopy |